Gene family  

Sub-families
ORTHO005402 (26 genes in 23 species)
ORTHO006678 (24 genes in 21 species)
ORTHO007968 (22 genes in 21 species)
View all sub-families (5)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (4 genes)
cpa
Carica papaya (4 genes)
cre
Chlamydomonas reinhardtii (3 genes)
fve
Fragaria vesca (4 genes)
gma
Glycine max (5 genes)
lja
Lotus japonicus (3 genes)
mdo
Malus domestica (6 genes)
mes
Manihot esculenta (3 genes)
mrcc299
Micromonas sp. RCC299 (4 genes)
mtr
Medicago truncatula (3 genes)
olu
Ostreococcus lucimarinus (4 genes)
osa
Oryza sativa ssp. japonica (3 genes)
osaindica
Oryza sativa ssp. indica (3 genes)
ota
Ostreococcus tauri (3 genes)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (4 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (3 genes)
tca
Theobroma cacao (3 genes)
vca
Volvox carteri (2 genes)
vvi
Vitis vinifera (4 genes)
zma
Zea mays (3 genes)



The gene family HOM001448 has 81 genes in 24 species (2 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 5, showing 20 records out of 81 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL5G17270 aly name=fgenesh1_pg.C_scaffold_5001324;pid=347932;prot=eq;tid=347932 + scaffold_5 No
AL7G02240 aly name=scaffold_700231.1;pid=912489;prot=eq;tid=944002 - scaffold_7 No
AT3G48420 ath Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast, chloroplast stroma, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), HAD-superfamily hydrolase, subfamily IA, variant 3 (InterPro:IPR006402); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT4G39970.1); Has 12560 Blast hits to 12559 proteins in 2179 species: Archae - 78; Bacteria - 10284; Metazoa - 135; Fungi - 145; Plants - 385; Viruses - 3; Other Eukaryotes - 1530 (source: NCBI BLink).;Haloacid dehalogenase-like hydrolase (HAD) superfamily protein transcript=eq;prot=eq; + 3 No
AT3G48425 ath DNAse I-like superfamily protein; FUNCTIONS IN: hydrolase activity, nuclease activity; INVOLVED IN: DNA repair; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Endonuclease/exonuclease/phosphatase (InterPro:IPR005135), Exodeoxyribonuclease III xth (InterPro:IPR004808); BEST Arabidopsis thaliana protein match is: apurinic endonuclease-redox protein (TAIR:AT2G41460.1); Has 5913 Blast hits to 5912 proteins in 1998 species: Archae - 119; Bacteria - 3923; Metazoa - 218; Fungi - 82; Plants - 109; Viruses - 0; Other Eukaryotes - 1462 (source: NCBI BLink).;DNAse I-like superfamily protein transcript=eq;prot=eq; + 3 No
AT4G39970 ath Haloacid dehalogenase-like hydrolase (HAD) superfamily protein; FUNCTIONS IN: hydrolase activity, catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: chloroplast, chloroplast stroma, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haloacid dehalogenase-like hydrolase (InterPro:IPR005834), HAD-superfamily hydrolase, subfamily IA, variant 3 (InterPro:IPR006402); BEST Arabidopsis thaliana protein match is: Haloacid dehalogenase-like hydrolase (HAD) superfamily protein (TAIR:AT3G48420.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Haloacid dehalogenase-like hydrolase (HAD) superfamily protein transcript=eq;prot=eq; - 4 No
BD1G41820 bdi pid=Bradi1g41820.1;tid=Bradi1g41820.1;GeneName=Bradi1g41820;transcript=eq;prot=eq - Bd1 No
BD3G38760 bdi phosphatase activity (Blast2GO) pid=Bradi3g38760.8;tid=Bradi3g38760.8;GeneName=Bradi3g38760;transcript=eq;prot=eq - Bd3 No
BD3G38777 bdi pid=Bradi3g38777.1;tid=Bradi3g38777.1;GeneName=Bradi3g38777;transcript=eq;prot=eq - Bd3 No
BD4G39120 bdi exodeoxyribonuclease activity, producing 5'-phosphomonoesters (Blast2GO) pid=Bradi4g39120.1;tid=Bradi4g39120.1;GeneName=Bradi4g39120;transcript=eq;prot=eq + Bd4 No
CP00004G00470 cpa name=evm.TU.supercontig_4.47;pid=evm.TU.supercontig_4.47;prot=eq;transcript=eq - supercontig_4 No
CP00004G00480 cpa name=evm.TU.supercontig_4.48;pid=evm.TU.supercontig_4.48;prot=eq;transcript=eq + supercontig_4 No
CP00337G00040 cpa name=evm.TU.supercontig_337.4;pid=evm.TU.supercontig_337.4;prot=eq;transcript=eq - supercontig_337 No
CP45383G00010 cpa name=evm.TU.contig_45383.1;pid=evm.TU.contig_45383.1;prot=eq;transcript=eq + contig_45383 No
CR03G12060 cre name=SKA_Chlre2_kg.scaffold_19000154;pid=196953;prot=eq;tid=196958;transcript=eq - chromosome_3 No
CR14G03040 cre name=au.g5521_t1;pid=287273;prot=eq;tid=287280;transcript=eq + chromosome_14 No
CR16G01870 cre name=pasa_Sanger_mRNA15184;pid=395805;prot=eq;tid=405513;transcript=eq - chromosome_16 No
FV0G22490 fve Protein cbbY (probable) transcript=eq;prot=eq;pid=gene16275 + scf0513168 No
FV0G40790 fve Protein cbbY (probable) transcript=eq;prot=eq;pid=gene28032 + scf0513124 No
FV5G09490 fve Protein cbbY (probable) transcript=eq;prot=eq;pid=gene09901 - LG5 No
FV5G09500 fve DNA-(apurinic or apyrimidinic site) lyase (probable) transcript=eq;prot=eq;pid=gene09902 + LG5 No
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