Gene family 
- Id
- HOM001434
- Method
- BLASTP E_value=1e-05 MCL_I=2
- Sequences
- Sub-families
-
ORTHO008134 (22 genes in 19 species)
ORTHO008467 (21 genes in 17 species)
ORTHO009853 (19 genes in 18 species)
View all sub-families (6)
- Keywords
-
Overview of gene family content
- aly
- Arabidopsis lyrata (5 genes)
- ath
- Arabidopsis thaliana (5 genes)
- bdi
- Brachypodium distachyon (6 genes)
- cpa
- Carica papaya (3 genes)
- fve
- Fragaria vesca (3 genes)
- gma
- Glycine max (8 genes)
- lja
- Lotus japonicus (4 genes)
- mdo
- Malus domestica (5 genes)
- mes
- Manihot esculenta (3 genes)
- mtr
- Medicago truncatula (8 genes)
- osa
- Oryza sativa ssp. japonica (4 genes)
- osaindica
- Oryza sativa ssp. indica (4 genes)
- ppa
- Physcomitrella patens (2 genes)
- ptr
- Populus trichocarpa (3 genes)
- rco
- Ricinus communis (3 genes)
- sbi
- Sorghum bicolor (4 genes)
- smo
- Selaginella moellendorffii (2 genes)
- tca
- Theobroma cacao (3 genes)
- vvi
- Vitis vinifera (3 genes)
- zma
- Zea mays (4 genes)
The gene family HOM001434 has 82 genes in 20 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:
- gene family : HOM001434
Page 1 of 5, showing 20 records out of 82 total, starting on record 1, ending on 20
| gene_id | species | description | comment | strand | chr | outlier |
|---|---|---|---|---|---|---|
| AL1G11360 | aly | name=fgenesh2_kg.1__1208__AT1G11190.1;pid=471254;prot=eq;tid=471254 | - | scaffold_1 | No | |
| AL2G16400 | aly | name=fgenesh2_kg.2__1077__AT1G68290.1;pid=475947;prot=eq;tid=475947 | + | scaffold_2 | No | |
| AL7G21070 | aly | name=fgenesh2_kg.7__2149__AT4G21600.1;pid=492716;prot=eq;tid=492716 | - | scaffold_7 | No | |
| AL7G21080 | aly | name=fgenesh2_kg.7__2151__AT4G21590.1;pid=492718;prot=eq;tid=492718 | - | scaffold_7 | No | |
| AL7G21090 | aly | name=fgenesh2_kg.7__2152__AT4G21585.1;pid=492719;prot=eq;tid=492719 | - | scaffold_7 | No | |
| AT1G11190 | ath | Encodes a bifunctional nuclease that acts on both RNA and DNA involved in nucleic acid degradation to facilitate nucleotide and phosphate recovery during senescence. It has mismatch-specific endonuclease activity with wide recognition of single base mismatches as well as the ability to cleave indel types of mismatches (heteroduplexes with loops).;bifunctional nuclease i | transcript=eq;prot=eq; | - | 1 | No |
| AT1G68290 | ath | Encodes a putative endonuclease but no demonstrable endonuclease activity, either towards single stranded DNA or mismatches, has been seen in vitro.;endonuclease 2 | transcript=eq;prot=eq; | + | 1 | No |
| AT4G21585 | ath | Encodes a putative endonuclease but no demonstrable endonuclease activity, either towards single stranded DNA or mismatches, has been seen in vitro.;endonuclease 4 | transcript=eq;prot=eq; | + | 4 | No |
| AT4G21590 | ath | Encodes a putative endonuclease but no demonstrable endonuclease activity, either towards single stranded DNA or mismatches, has been seen in vitro. Activated by AGAMOUS in a cal-1, ap1-1 background. Expressed in the floral meristem and during stamen development.;endonuclease 3 | transcript=eq;prot=eq; | + | 4 | No |
| AT4G21600 | ath | Encodes a protein with mismatch-specific endonuclease activity with a preference for T/G, A/G, and G/G of single base mismatches. It also has the ability to cleave indel types of mismatches (heteroduplexes with loops).;endonuclease 5 | transcript=eq;prot=eq; | + | 4 | No |
| BD1G50245 | bdi | pid=Bradi1g50245.1;tid=Bradi1g50245.1;GeneName=Bradi1g50245;transcript=eq;prot=eq | + | Bd1 | Yes | |
| BD2G01967 | bdi | pid=Bradi2g01967.1;tid=Bradi2g01967.1;GeneName=Bradi2g01967;transcript=eq;prot=eq | - | Bd2 | No | |
| BD2G01980 | bdi | endonuclease activity (Blast2GO) | pid=Bradi2g01980.1;tid=Bradi2g01980.1;GeneName=Bradi2g01980;transcript=eq;prot=eq | + | Bd2 | No |
| BD5G23280 | bdi | endonuclease activity (Blast2GO) | pid=Bradi5g23280.1;tid=Bradi5g23280.1;GeneName=Bradi5g23280;transcript=eq;prot=eq | + | Bd5 | No |
| BD5G24140 | bdi | endonuclease activity (Blast2GO) | pid=Bradi5g24140.1;tid=Bradi5g24140.1;GeneName=Bradi5g24140;transcript=eq;prot=eq | - | Bd5 | No |
| BD5G24430 | bdi | endonuclease activity (Blast2GO) | pid=Bradi5g24430.1;tid=Bradi5g24430.1;GeneName=Bradi5g24430;transcript=eq;prot=eq | - | Bd5 | No |
| CP00001G00260 | cpa | name=evm.TU.supercontig_1.26;pid=evm.TU.supercontig_1.26;prot=eq;transcript=eq | + | supercontig_1 | No | |
| CP00027G01040 | cpa | name=evm.TU.supercontig_27.105;pid=evm.TU.supercontig_27.105;prot=eq;transcript=eq | - | supercontig_27 | No | |
| CP00027G01050 | cpa | name=evm.TU.supercontig_27.106;pid=evm.TU.supercontig_27.106;prot=eq;transcript=eq | - | supercontig_27 | No | |
| FV0G01460 | fve | Nuclease S1, Precursor (probable) | transcript=eq;prot=eq;pid=gene03722 | - | scf0513158 | No |