Gene family  

Sub-families
ORTHO008134 (22 genes in 19 species)
ORTHO008467 (21 genes in 17 species)
ORTHO009853 (19 genes in 18 species)
View all sub-families (6)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (5 genes)
ath
Arabidopsis thaliana (5 genes)
bdi
Brachypodium distachyon (6 genes)
cpa
Carica papaya (3 genes)
fve
Fragaria vesca (3 genes)
gma
Glycine max (8 genes)
lja
Lotus japonicus (4 genes)
mdo
Malus domestica (5 genes)
mes
Manihot esculenta (3 genes)
mtr
Medicago truncatula (8 genes)
osa
Oryza sativa ssp. japonica (4 genes)
osaindica
Oryza sativa ssp. indica (4 genes)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (3 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (4 genes)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (3 genes)
vvi
Vitis vinifera (3 genes)
zma
Zea mays (4 genes)



The gene family HOM001434 has 82 genes in 20 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 5, showing 20 records out of 82 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G11360 aly name=fgenesh2_kg.1__1208__AT1G11190.1;pid=471254;prot=eq;tid=471254 - scaffold_1 No
AL2G16400 aly name=fgenesh2_kg.2__1077__AT1G68290.1;pid=475947;prot=eq;tid=475947 + scaffold_2 No
AL7G21070 aly name=fgenesh2_kg.7__2149__AT4G21600.1;pid=492716;prot=eq;tid=492716 - scaffold_7 No
AL7G21080 aly name=fgenesh2_kg.7__2151__AT4G21590.1;pid=492718;prot=eq;tid=492718 - scaffold_7 No
AL7G21090 aly name=fgenesh2_kg.7__2152__AT4G21585.1;pid=492719;prot=eq;tid=492719 - scaffold_7 No
AT1G11190 ath Encodes a bifunctional nuclease that acts on both RNA and DNA involved in nucleic acid degradation to facilitate nucleotide and phosphate recovery during senescence. It has mismatch-specific endonuclease activity with wide recognition of single base mismatches as well as the ability to cleave indel types of mismatches (heteroduplexes with loops).;bifunctional nuclease i transcript=eq;prot=eq; - 1 No
AT1G68290 ath Encodes a putative endonuclease but no demonstrable endonuclease activity, either towards single stranded DNA or mismatches, has been seen in vitro.;endonuclease 2 transcript=eq;prot=eq; + 1 No
AT4G21585 ath Encodes a putative endonuclease but no demonstrable endonuclease activity, either towards single stranded DNA or mismatches, has been seen in vitro.;endonuclease 4 transcript=eq;prot=eq; + 4 No
AT4G21590 ath Encodes a putative endonuclease but no demonstrable endonuclease activity, either towards single stranded DNA or mismatches, has been seen in vitro. Activated by AGAMOUS in a cal-1, ap1-1 background. Expressed in the floral meristem and during stamen development.;endonuclease 3 transcript=eq;prot=eq; + 4 No
AT4G21600 ath Encodes a protein with mismatch-specific endonuclease activity with a preference for T/G, A/G, and G/G of single base mismatches. It also has the ability to cleave indel types of mismatches (heteroduplexes with loops).;endonuclease 5 transcript=eq;prot=eq; + 4 No
BD1G50245 bdi pid=Bradi1g50245.1;tid=Bradi1g50245.1;GeneName=Bradi1g50245;transcript=eq;prot=eq + Bd1 Yes
BD2G01967 bdi pid=Bradi2g01967.1;tid=Bradi2g01967.1;GeneName=Bradi2g01967;transcript=eq;prot=eq - Bd2 No
BD2G01980 bdi endonuclease activity (Blast2GO) pid=Bradi2g01980.1;tid=Bradi2g01980.1;GeneName=Bradi2g01980;transcript=eq;prot=eq + Bd2 No
BD5G23280 bdi endonuclease activity (Blast2GO) pid=Bradi5g23280.1;tid=Bradi5g23280.1;GeneName=Bradi5g23280;transcript=eq;prot=eq + Bd5 No
BD5G24140 bdi endonuclease activity (Blast2GO) pid=Bradi5g24140.1;tid=Bradi5g24140.1;GeneName=Bradi5g24140;transcript=eq;prot=eq - Bd5 No
BD5G24430 bdi endonuclease activity (Blast2GO) pid=Bradi5g24430.1;tid=Bradi5g24430.1;GeneName=Bradi5g24430;transcript=eq;prot=eq - Bd5 No
CP00001G00260 cpa name=evm.TU.supercontig_1.26;pid=evm.TU.supercontig_1.26;prot=eq;transcript=eq + supercontig_1 No
CP00027G01040 cpa name=evm.TU.supercontig_27.105;pid=evm.TU.supercontig_27.105;prot=eq;transcript=eq - supercontig_27 No
CP00027G01050 cpa name=evm.TU.supercontig_27.106;pid=evm.TU.supercontig_27.106;prot=eq;transcript=eq - supercontig_27 No
FV0G01460 fve Nuclease S1, Precursor (probable) transcript=eq;prot=eq;pid=gene03722 - scf0513158 No
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