Gene family  

Sub-families
ORTHO005292 (26 genes in 18 species)
ORTHO011920 (16 genes in 10 species)
ORTHO028030 (4 genes in 3 species)
View all sub-families (12)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (8 genes)
ath
Arabidopsis thaliana (10 genes)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (1 gene)
fve
Fragaria vesca (9 genes)
gma
Glycine max (8 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (11 genes)
mes
Manihot esculenta (4 genes)
mtr
Medicago truncatula (4 genes)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ptr
Populus trichocarpa (5 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (5 genes)
tca
Theobroma cacao (2 genes)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (3 genes)



The gene family HOM001424 has 82 genes in 19 species (2 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 5, showing 20 records out of 82 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G39780 aly name=fgenesh1_pm.C_scaffold_3002827;pid=319811;prot=eq;tid=319811 + scaffold_3 No
AL5G27490 aly name=scaffold_502873.1;pid=907169;prot=eq;tid=938682 - scaffold_5 No
AL7G06640 aly name=fgenesh1_pg.C_scaffold_7000564;pid=353391;prot=eq;tid=353391 - scaffold_7 No
AL7G06650 aly name=fgenesh2_kg.7__666__AT4G34320.1;pid=491233;prot=eq;tid=491233 - scaffold_7 No
AL7G35000 aly name=scaffold_703677.1;pid=915935;prot=eq;tid=947448 - scaffold_7 Yes
AL8G33970 aly name=fgenesh2_kg.8__2750__AT5G66675.1;pid=496934;prot=eq;tid=496934 + scaffold_8 No
AL8G33980 aly name=scaffold_803458.1;pid=920058;prot=eq;tid=951571 + scaffold_8 No
AL8G33990 aly name=scaffold_803459.1;pid=920059;prot=eq;tid=951572 + scaffold_8 No
AT2G18630 ath Protein of unknown function (DUF677); INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: plasma membrane, peroxisome, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF677 (InterPro:IPR007749); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF677) (TAIR:AT5G66675.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;Protein of unknown function (DUF677) transcript=eq;prot=eq; + 2 No
AT3G28270 ath Protein of unknown function (DUF677); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF677 (InterPro:IPR007749); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF677) (TAIR:AT3G28290.1); Has 636 Blast hits to 621 proteins in 191 species: Archae - 37; Bacteria - 189; Metazoa - 134; Fungi - 25; Plants - 165; Viruses - 1; Other Eukaryotes - 85 (source: NCBI BLink).;Protein of unknown function (DUF677) transcript=eq;prot=eq; + 3 No
AT3G28290 ath Encodes a protein with sequence similarity to integrins. Localized to the cytoplasm and plasma membrane. Expressed in all tissues assayed.;Protein of unknown function (DUF677) transcript=eq;prot=eq; + 3 No
AT3G28300 ath Possesses a transmembrane domain and a small region that has sequence similarities to integrins from fungi, insects and humans. Is localized to plasma membrane and cytoplasm.;Protein of unknown function (DUF677) transcript=eq;prot=eq; + 3 No
AT3G57100 ath Protein of unknown function (DUF677); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF677 (InterPro:IPR007749); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF677) (TAIR:AT4G34320.1); Has 123 Blast hits to 123 proteins in 12 species: Archae - 2; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 116; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).;Protein of unknown function (DUF677) transcript=eq;prot=eq; - 3 No
AT4G34320 ath Protein of unknown function (DUF677); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: hypocotyl, sepal, flower, carpel, stamen; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF677 (InterPro:IPR007749); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF677) (TAIR:AT4G34330.1); Has 254 Blast hits to 251 proteins in 19 species: Archae - 0; Bacteria - 4; Metazoa - 2; Fungi - 0; Plants - 246; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).;Protein of unknown function (DUF677) transcript=eq;prot=eq; + 4 No
AT4G34330 ath Protein of unknown function (DUF677); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF677 (InterPro:IPR007749); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF677) (TAIR:AT4G34320.1); Has 165 Blast hits to 164 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 165; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;Protein of unknown function (DUF677) transcript=eq;prot=eq; + 4 No
AT5G66660 ath Protein of unknown function (DUF677); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: inflorescence meristem; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF677 (InterPro:IPR007749); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF677) (TAIR:AT5G66670.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;Protein of unknown function (DUF677) transcript=eq;prot=eq; - 5 No
AT5G66670 ath Protein of unknown function (DUF677); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: inflorescence meristem, hypocotyl, root; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF677 (InterPro:IPR007749); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF677) (TAIR:AT5G66660.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;Protein of unknown function (DUF677) transcript=eq;prot=eq; - 5 No
AT5G66675 ath Protein of unknown function (DUF677); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF677 (InterPro:IPR007749); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF677) (TAIR:AT2G18630.1); Has 241 Blast hits to 232 proteins in 16 species: Archae - 0; Bacteria - 3; Metazoa - 0; Fungi - 0; Plants - 237; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).;Protein of unknown function (DUF677) transcript=eq;prot=eq; - 5 No
BD1G71240 bdi pid=Bradi1g71240.1;tid=Bradi1g71240.1;GeneName=Bradi1g71240;transcript=eq;prot=eq - Bd1 No
CP00062G01060 cpa name=evm.TU.supercontig_62.107;pid=evm.TU.supercontig_62.107;prot=eq;transcript=eq - supercontig_62 No
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