Gene family  

Sub-families
ORTHO003913 (28 genes in 24 species)
ORTHO006095 (25 genes in 22 species)
ORTHO010252 (19 genes in 18 species)
View all sub-families (5)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (3 genes)
cpa
Carica papaya (3 genes)
cre
Chlamydomonas reinhardtii (2 genes)
fve
Fragaria vesca (2 genes)
gma
Glycine max (5 genes)
lja
Lotus japonicus (7 genes)
mdo
Malus domestica (10 genes)
mes
Manihot esculenta (3 genes)
mrcc299
Micromonas sp. RCC299 (2 genes)
mtr
Medicago truncatula (3 genes)
olu
Ostreococcus lucimarinus (2 genes)
osa
Oryza sativa ssp. japonica (3 genes)
osaindica
Oryza sativa ssp. indica (3 genes)
ota
Ostreococcus tauri (2 genes)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (4 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (3 genes)
vca
Volvox carteri (2 genes)
vvi
Vitis vinifera (4 genes)
zma
Zea mays (5 genes)



The gene family HOM001417 has 83 genes in 25 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 5, showing 20 records out of 83 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL4G35430 aly name=scaffold_403698.1;pid=904197;prot=eq;tid=935710 + scaffold_4 No
AL6G39600 aly name=fgenesh2_kg.6__3517__AT4G01935.1;pid=490383;prot=eq;tid=490383 - scaffold_6 No
AL8G30690 aly name=fgenesh2_kg.8__2414__AT5G64040.1;pid=496598;prot=eq;tid=496598 - scaffold_8 No
AT2G47210 ath myb-like transcription factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: N-terminal protein myristoylation, negative regulation of transcription, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), DNA methyltransferase 1-associated 1 (InterPro:IPR008468); Has 383 Blast hits to 375 proteins in 190 species: Archae - 0; Bacteria - 2; Metazoa - 140; Fungi - 145; Plants - 43; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).;myb-like transcription factor family protein transcript=eq;prot=eq; + 2 No
AT4G01935 ath unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 37 Blast hits to 37 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). transcript=eq;prot=eq; + 4 No
AT5G64040 ath Encodes the only subunit of photosystem I located entirely in the thylakoid lumen. May be involved in the interaction between plastocyanin and the photosystem I complex.;photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN) transcript=eq;prot=eq; - 5 No
BD2G08910 bdi pid=Bradi2g08910.1;tid=Bradi2g08910.1;GeneName=Bradi2g08910;transcript=eq;prot=eq + Bd2 No
BD2G18250 bdi MYB-related transcription factor pid=Bradi2g18250.1;tid=Bradi2g18250.1;GeneName=Bradi2g18250;Name=BdMYBR28;transcript=eq;prot=eq - Bd2 No
BD4G40780 bdi pid=Bradi4g40780.1;tid=Bradi4g40780.1;GeneName=Bradi4g40780;transcript=eq;prot=eq - Bd4 No
CP00003G03450 cpa name=evm.TU.supercontig_3.345;pid=evm.TU.supercontig_3.345;prot=eq;transcript=eq - supercontig_3 No
CP00018G00950 cpa name=evm.TU.supercontig_18.95;pid=evm.TU.supercontig_18.95;prot=eq;transcript=eq - supercontig_18 No
CP00018G00960 cpa name=evm.TU.supercontig_18.96;pid=evm.TU.supercontig_18.96;prot=eq;transcript=eq - supercontig_18 No
CR01G11970 cre name=estExt_fgenesh2_pg.C_270172;pid=192018;prot=eq;tid=192018;transcript=eq + chromosome_1 No
CR02G02040 cre name=estExt_fgenesh2_pg.C_70196;pid=186531;prot=eq;tid=186531;transcript=eq + chromosome_2 No
FV0G21020 fve Photosystem I reaction center subunit N, chloroplastic (PSI-N), Precursor (putative) transcript=eq;prot=eq;pid=gene16185 + scf0513168 No
FV1G27370 fve SWR1-complex protein 4 (probable) transcript=eq;prot=eq;pid=gene20578 - LG1 No
GM02G01350 gma 02 pid=16246597;transcript=eq;prot=eq;name=Glyma02g01350.1 + Gm02 No
GM03G38020 gma 03 pid=16253720;transcript=eq;prot=eq;name=Glyma03g38020.1 - Gm03 No
GM04G39370 gma 04 pid=16257265;transcript=eq;prot=eq;name=Glyma04g39370.1 + Gm04 No
GM06G15540 gma 06 pid=16263073;transcript=eq;prot=eq;name=Glyma06g15540.1 - Gm06 No
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