Gene family 
- Id
- HOM001417
- Method
- BLASTP E_value=1e-05 MCL_I=2
- Sequences
- Sub-families
-
ORTHO003913 (28 genes in 24 species)
ORTHO006095 (25 genes in 22 species)
ORTHO010252 (19 genes in 18 species)
View all sub-families (5)
- Keywords
-
Overview of gene family content
- aly
- Arabidopsis lyrata (3 genes)
- ath
- Arabidopsis thaliana (3 genes)
- bdi
- Brachypodium distachyon (3 genes)
- cpa
- Carica papaya (3 genes)
- cre
- Chlamydomonas reinhardtii (2 genes)
- fve
- Fragaria vesca (2 genes)
- gma
- Glycine max (5 genes)
- lja
- Lotus japonicus (7 genes)
- mdo
- Malus domestica (10 genes)
- mes
- Manihot esculenta (3 genes)
- mrcc299
- Micromonas sp. RCC299 (2 genes)
- mtr
- Medicago truncatula (3 genes)
- olu
- Ostreococcus lucimarinus (2 genes)
- osa
- Oryza sativa ssp. japonica (3 genes)
- osaindica
- Oryza sativa ssp. indica (3 genes)
- ota
- Ostreococcus tauri (2 genes)
- ppa
- Physcomitrella patens (2 genes)
- ptr
- Populus trichocarpa (4 genes)
- rco
- Ricinus communis (3 genes)
- sbi
- Sorghum bicolor (2 genes)
- smo
- Selaginella moellendorffii (2 genes)
- tca
- Theobroma cacao (3 genes)
- vca
- Volvox carteri (2 genes)
- vvi
- Vitis vinifera (4 genes)
- zma
- Zea mays (5 genes)
The gene family HOM001417 has 83 genes in 25 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:
- gene family : HOM001417
Page 1 of 5, showing 20 records out of 83 total, starting on record 1, ending on 20
| gene_id | species | description | comment | strand | chr | outlier |
|---|---|---|---|---|---|---|
| AL4G35430 | aly | name=scaffold_403698.1;pid=904197;prot=eq;tid=935710 | + | scaffold_4 | No | |
| AL6G39600 | aly | name=fgenesh2_kg.6__3517__AT4G01935.1;pid=490383;prot=eq;tid=490383 | - | scaffold_6 | No | |
| AL8G30690 | aly | name=fgenesh2_kg.8__2414__AT5G64040.1;pid=496598;prot=eq;tid=496598 | - | scaffold_8 | No | |
| AT2G47210 | ath | myb-like transcription factor family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: N-terminal protein myristoylation, negative regulation of transcription, regulation of transcription, DNA-dependent; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), DNA methyltransferase 1-associated 1 (InterPro:IPR008468); Has 383 Blast hits to 375 proteins in 190 species: Archae - 0; Bacteria - 2; Metazoa - 140; Fungi - 145; Plants - 43; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).;myb-like transcription factor family protein | transcript=eq;prot=eq; | + | 2 | No |
| AT4G01935 | ath | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 37 Blast hits to 37 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | transcript=eq;prot=eq; | + | 4 | No |
| AT5G64040 | ath | Encodes the only subunit of photosystem I located entirely in the thylakoid lumen. May be involved in the interaction between plastocyanin and the photosystem I complex.;photosystem I reaction center subunit PSI-N, chloroplast, putative / PSI-N, putative (PSAN) | transcript=eq;prot=eq; | - | 5 | No |
| BD2G08910 | bdi | pid=Bradi2g08910.1;tid=Bradi2g08910.1;GeneName=Bradi2g08910;transcript=eq;prot=eq | + | Bd2 | No | |
| BD2G18250 | bdi | MYB-related transcription factor | pid=Bradi2g18250.1;tid=Bradi2g18250.1;GeneName=Bradi2g18250;Name=BdMYBR28;transcript=eq;prot=eq | - | Bd2 | No |
| BD4G40780 | bdi | pid=Bradi4g40780.1;tid=Bradi4g40780.1;GeneName=Bradi4g40780;transcript=eq;prot=eq | - | Bd4 | No | |
| CP00003G03450 | cpa | name=evm.TU.supercontig_3.345;pid=evm.TU.supercontig_3.345;prot=eq;transcript=eq | - | supercontig_3 | No | |
| CP00018G00950 | cpa | name=evm.TU.supercontig_18.95;pid=evm.TU.supercontig_18.95;prot=eq;transcript=eq | - | supercontig_18 | No | |
| CP00018G00960 | cpa | name=evm.TU.supercontig_18.96;pid=evm.TU.supercontig_18.96;prot=eq;transcript=eq | - | supercontig_18 | No | |
| CR01G11970 | cre | name=estExt_fgenesh2_pg.C_270172;pid=192018;prot=eq;tid=192018;transcript=eq | + | chromosome_1 | No | |
| CR02G02040 | cre | name=estExt_fgenesh2_pg.C_70196;pid=186531;prot=eq;tid=186531;transcript=eq | + | chromosome_2 | No | |
| FV0G21020 | fve | Photosystem I reaction center subunit N, chloroplastic (PSI-N), Precursor (putative) | transcript=eq;prot=eq;pid=gene16185 | + | scf0513168 | No |
| FV1G27370 | fve | SWR1-complex protein 4 (probable) | transcript=eq;prot=eq;pid=gene20578 | - | LG1 | No |
| GM02G01350 | gma | 02 | pid=16246597;transcript=eq;prot=eq;name=Glyma02g01350.1 | + | Gm02 | No |
| GM03G38020 | gma | 03 | pid=16253720;transcript=eq;prot=eq;name=Glyma03g38020.1 | - | Gm03 | No |
| GM04G39370 | gma | 04 | pid=16257265;transcript=eq;prot=eq;name=Glyma04g39370.1 | + | Gm04 | No |
| GM06G15540 | gma | 06 | pid=16263073;transcript=eq;prot=eq;name=Glyma06g15540.1 | - | Gm06 | No |