Gene family  

Sub-families
ORTHO002154 (33 genes in 23 species)
ORTHO005078 (26 genes in 23 species)
ORTHO038888 (3 genes in 3 species)
View all sub-families (5)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (4 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (4 genes)
cpa
Carica papaya (3 genes)
cre
Chlamydomonas reinhardtii (2 genes)
fve
Fragaria vesca (2 genes)
gma
Glycine max (4 genes)
lja
Lotus japonicus (3 genes)
mdo
Malus domestica (7 genes)
mes
Manihot esculenta (2 genes)
mrcc299
Micromonas sp. RCC299 (2 genes)
olu
Ostreococcus lucimarinus (2 genes)
osa
Oryza sativa ssp. japonica (4 genes)
osaindica
Oryza sativa ssp. indica (4 genes)
ota
Ostreococcus tauri (2 genes)
ppa
Physcomitrella patens (5 genes)
ptr
Populus trichocarpa (7 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (4 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (4 genes)
vca
Volvox carteri (2 genes)
vvi
Vitis vinifera (5 genes)
zma
Zea mays (5 genes)



The gene family HOM001394 has 84 genes in 24 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 5, showing 20 records out of 84 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G17910 aly name=Al_scaffold_0001_1761;pid=879994;prot=eq;tid=911507 + scaffold_1 No
AL2G27520 aly name=scaffold_202825.1;pid=895751;prot=eq;tid=927264 - scaffold_2 No
AL4G19880 aly name=scaffold_402051.1;pid=902550;prot=eq;tid=934063 + scaffold_4 No
AL7G39020 aly name=fgenesh2_kg.7__3482__AT1G17050.1;pid=494049;prot=eq;tid=494049 + scaffold_7 No
AT1G17050 ath Encodes a protein with solanesyl diphosphate synthase activity.;solanesyl diphosphate synthase 2 transcript=eq;prot=eq; + 1 No
AT1G78510 ath Encodes a protein with solanesyl diphosphate synthase activity.;solanesyl diphosphate synthase 1 transcript=eq;prot=eq; - 1 No
AT2G34630 ath Encodes a geranyl diphosphate synthase. RNAi lines are dwarf. T-DNA knock-out lines are embryo lethal.;geranyl diphosphate synthase 1 transcript=eq;prot=eq; + 2 No
BD1G05210 bdi di-trans,poly-cis-decaprenylcistransferase activity, farnesyltranstransferase activity (Blast2GO) pid=Bradi1g05210.1;tid=Bradi1g05210.1;GeneName=Bradi1g05210;transcript=eq;prot=eq - Bd1 No
BD1G32530 bdi di-trans,poly-cis-decaprenylcistransferase activity, farnesyltranstransferase activity (Blast2GO) pid=Bradi1g32530.1;tid=Bradi1g32530.1;GeneName=Bradi1g32530;transcript=eq;prot=eq + Bd1 No
BD2G15307 bdi pid=Bradi2g15307.1;tid=Bradi2g15307.1;GeneName=Bradi2g15307;transcript=eq;prot=eq + Bd2 No
BD4G39197 bdi pid=Bradi4g39197.1;tid=Bradi4g39197.1;GeneName=Bradi4g39197;transcript=eq;prot=eq + Bd4 No
CP00017G00410 cpa name=evm.TU.supercontig_17.41;pid=evm.TU.supercontig_17.41;prot=eq;transcript=eq + supercontig_17 No
CP01272G00020 cpa name=evm.TU.supercontig_1272.2;pid=evm.TU.supercontig_1272.2;prot=eq;transcript=eq + supercontig_1272 No
CP47384G00010 cpa name=evm.TU.contig_47384.1;pid=evm.TU.contig_47384.1;prot=eq;transcript=eq - contig_47384 No
CR12G05790 cre name=estExt_gwp_1W.C_110007;pid=135421;prot=eq;tid=135421;transcript=eq - chromosome_12 No
CR13G00780 cre name=estExt_fgenesh2_kg.C_20016;pid=182663;prot=eq;tid=182663;transcript=eq + chromosome_13 No
FV3G05770 fve Probable hexaprenyl pyrophosphate synthetase, mitochondrial (HPS), Precursor transcript=eq;prot=eq;pid=gene30385 + LG3 No
FV3G19850 fve Prenyl transferase (similar to) transcript=eq;prot=eq;pid=gene27140 + LG3 No
GM05G21570 gma 05 pid=16259209;transcript=eq;prot=eq;name=Glyma05g21570.1 + Gm05 No
GM13G33710 gma 13 pid=16292512;transcript=eq;prot=eq;name=Glyma13g33710.1 - Gm13 No
<< previous
1 | 2 | 3 | 4 | 5 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier