Gene family  

Sub-families
ORTHO001149 (41 genes in 24 species)
ORTHO021091 (5 genes in 4 species)
ORTHO025435 (5 genes in 1 species)
View all sub-families (10)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (7 genes)
ath
Arabidopsis thaliana (5 genes)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (4 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (1 gene)
gma
Glycine max (6 genes)
lja
Lotus japonicus (5 genes)
mdo
Malus domestica (5 genes)
mes
Manihot esculenta (4 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (3 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (4 genes)
ptr
Populus trichocarpa (4 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (14 genes)
tca
Theobroma cacao (6 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (3 genes)



The gene family HOM001392 has 85 genes in 25 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 5, showing 20 records out of 85 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G09700 aly name=fgenesh1_pm.C_scaffold_1000816;pid=312036;prot=eq;tid=312036 - scaffold_1 No
AL1G09710 aly name=Al_scaffold_0001_963;pid=879196;prot=eq;tid=910709 - scaffold_1 No
AL2G07770 aly name=Al_scaffold_0002_715;pid=876121;prot=eq;tid=907634 - scaffold_2 No
AL2G07780 aly name=Al_scaffold_0002_716;pid=876122;prot=eq;tid=907635 - scaffold_2 No
AL3G38010 aly name=fgenesh2_kg.3__3314__AT2G17280.1;pid=480613;prot=eq;tid=480613 + scaffold_3 No
AL8G11410 aly name=Al_scaffold_0008_1103;pid=884839;prot=eq;tid=916352 + scaffold_8 No
AL8G31160 aly name=scaffold_803164.1;pid=919764;prot=eq;tid=951277 - scaffold_8 No
AT1G09932 ath Phosphoglycerate mutase family protein; CONTAINS InterPro DOMAIN/s: Histidine phosphatase superfamily, clade-1 (InterPro:IPR013078); BEST Arabidopsis thaliana protein match is: Phosphoglycerate mutase family protein (TAIR:AT2G17280.2); Has 552 Blast hits to 552 proteins in 105 species: Archae - 0; Bacteria - 9; Metazoa - 0; Fungi - 272; Plants - 167; Viruses - 0; Other Eukaryotes - 104 (source: NCBI BLink).;Phosphoglycerate mutase family protein transcript=eq;prot=eq; - 1 No
AT1G09935 ath Phosphoglycerate mutase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Histidine phosphatase superfamily, clade-1 (InterPro:IPR013078), Phosphoglycerate/bisphosphoglycerate mutase, active site (InterPro:IPR001345); BEST Arabidopsis thaliana protein match is: Phosphoglycerate mutase family protein (TAIR:AT1G58280.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;Phosphoglycerate mutase family protein transcript=eq;prot=eq; - 1 No
AT1G58280 ath Phosphoglycerate mutase family protein; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Histidine phosphatase superfamily, clade-1 (InterPro:IPR013078); BEST Arabidopsis thaliana protein match is: Phosphoglycerate mutase family protein (TAIR:AT5G64460.8); Has 412 Blast hits to 412 proteins in 84 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 152; Plants - 162; Viruses - 0; Other Eukaryotes - 92 (source: NCBI BLink).;Phosphoglycerate mutase family protein transcript=eq;prot=eq; - 1 No
AT2G17280 ath Phosphoglycerate mutase family protein; FUNCTIONS IN: catalytic activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histidine phosphatase superfamily, clade-1 (InterPro:IPR013078); BEST Arabidopsis thaliana protein match is: Phosphoglycerate mutase family protein (TAIR:AT5G64460.8); Has 682 Blast hits to 682 proteins in 146 species: Archae - 0; Bacteria - 77; Metazoa - 0; Fungi - 321; Plants - 168; Viruses - 0; Other Eukaryotes - 116 (source: NCBI BLink).;Phosphoglycerate mutase family protein transcript=eq;prot=eq; + 2 No
AT5G64460 ath Phosphoglycerate mutase family protein; CONTAINS InterPro DOMAIN/s: Histidine phosphatase superfamily, clade-1 (InterPro:IPR013078); BEST Arabidopsis thaliana protein match is: Phosphoglycerate mutase family protein (TAIR:AT1G58280.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;Phosphoglycerate mutase family protein transcript=eq;prot=eq; - 5 No
BD5G02400 bdi pid=Bradi5g02400.3;tid=Bradi5g02400.3;GeneName=Bradi5g02400;transcript=eq;prot=eq - Bd5 No
CP00020G00520 cpa name=evm.TU.supercontig_20.52;pid=evm.TU.supercontig_20.52;prot=eq;transcript=eq - supercontig_20 No
CP00177G00020 cpa name=evm.TU.supercontig_177.2;pid=evm.TU.supercontig_177.2;prot=eq;transcript=eq + supercontig_177 No
CP00911G00010 cpa name=evm.TU.supercontig_911.1;pid=evm.TU.supercontig_911.1;prot=eq;transcript=eq - supercontig_911 No
CP02735G00010 cpa name=evm.TU.supercontig_2735.1;pid=evm.TU.supercontig_2735.1;prot=eq;transcript=eq - supercontig_2735 No
CR12G07380 cre name=estExt_fgenesh2_pg.C_310209;pid=192686;prot=eq;tid=192686;transcript=eq + chromosome_12 No
FV5G23870 fve hypothetical protein transcript=eq;prot=eq;pid=gene26894 + LG5 No
GM02G38210 gma 02 pid=16249432;transcript=eq;prot=eq;name=Glyma02g38210.1 - Gm02 No
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