Gene family  

Sub-families
ORTHO000950 (44 genes in 22 species)
ORTHO011604 (17 genes in 14 species)
ORTHO039692 (3 genes in 1 species)
View all sub-families (6)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (5 genes)
cre
Chlamydomonas reinhardtii (2 genes)
fve
Fragaria vesca (3 genes)
gma
Glycine max (8 genes)
lja
Lotus japonicus (5 genes)
mdo
Malus domestica (11 genes)
mes
Manihot esculenta (4 genes)
mtr
Medicago truncatula (4 genes)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ppa
Physcomitrella patens (4 genes)
ptr
Populus trichocarpa (5 genes)
rco
Ricinus communis (4 genes)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (5 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (4 genes)
zma
Zea mays (4 genes)



The gene family HOM001382 has 85 genes in 22 species (4 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 5, showing 20 records out of 85 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL4G15100 aly name=scaffold_401535.1;pid=902034;prot=eq;tid=933547 - scaffold_4 No
AL7G09510 aly name=scaffold_700997.1;pid=913255;prot=eq;tid=944768 - scaffold_7 No
AL7G21130 aly name=scaffold_702259.1;pid=914517;prot=eq;tid=946030 - scaffold_7 No
AT2G30470 ath HSI2 is a member of a novel family of B3 domain proteins with a sequence similar to the ERF-associated amphiphilic repression (EAR) motif. It functions as an active repressor of the Spo minimal promoter (derived from a gene for sweet potato sporamin A1) through the EAR motif. It contains a plant-specific B3 DNA-binding domain. The Arabidopsis genome contains 42 genes with B3 domains which could be classified into three families that are represented by ABI3, ARF1 and RAV1. HSI2 belongs to the ABI3 family. It is expressed at similar levels in all organs. Treatment with 6% sucrose showed a slight increase in transcript levels after 24 h. No changes were observed after treatment with 50┬ÁM ABA. It is localized in the nucleus via a nuclear localization sequence located in the fourth conserved region of the C-terminal B3 domain.;high-level expression of sugar-inducible gene 2 transcript=eq;prot=eq; - 2 No
AT4G21550 ath VP1/ABI3-like 3 (VAL3); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: high-level expression of sugar-inducible gene 2 (TAIR:AT2G30470.1); Has 886 Blast hits to 853 proteins in 63 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 879; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).;VP1/ABI3-like 3 transcript=eq;prot=eq; + 4 No
AT4G32010 ath HSI2-like 1 (HSL1); CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340), Zinc finger, CW-type (InterPro:IPR011124); BEST Arabidopsis thaliana protein match is: high-level expression of sugar-inducible gene 2 (TAIR:AT2G30470.1); Has 1397 Blast hits to 1364 proteins in 123 species: Archae - 0; Bacteria - 0; Metazoa - 122; Fungi - 0; Plants - 1204; Viruses - 0; Other Eukaryotes - 71 (source: NCBI BLink).;HSI2-like 1 transcript=eq;prot=eq; + 4 No
BD1G17680 bdi ABI3VP1 transcription factor pid=Bradi1g17680.1;tid=Bradi1g17680.1;GeneName=Bradi1g17680;Name=BdABI7;transcript=eq;prot=eq + Bd1 No
BD1G24720 bdi ABI3VP1 transcription factor pid=Bradi1g24720.1;tid=Bradi1g24720.1;GeneName=Bradi1g24720;Name=BdABI8;transcript=eq;prot=eq - Bd1 No
CP00000G00830 cpa name=evm.TU.supercontig_0.83;pid=evm.TU.supercontig_0.83;prot=eq;transcript=eq - supercontig_0 No
CP00002G02790 cpa name=evm.TU.supercontig_2.279;pid=evm.TU.supercontig_2.279;prot=eq;transcript=eq + supercontig_2 No
CP00080G01160 cpa name=evm.TU.supercontig_80.116;pid=evm.TU.supercontig_80.116;prot=eq;transcript=eq - supercontig_80 No
CP03317G00010 cpa name=evm.TU.supercontig_3317.1;pid=evm.TU.supercontig_3317.1;prot=eq;transcript=eq - supercontig_3317 No
CP33243G00010 cpa name=evm.TU.contig_33243.1;pid=evm.TU.contig_33243.1;prot=eq;transcript=eq + contig_33243 No
CR04G03610 cre name=au.g11848_t1;pid=294072;prot=eq;tid=294079;transcript=eq + chromosome_4 Yes
CR13G00120 cre name=fgenesh1_pg.C_scaffold_2000015;pid=8922;prot=eq;tid=8922;transcript=eq - chromosome_13 No
FV3G07010 fve B3 domain-containing protein Os07g0563300 (probable) transcript=eq;prot=eq;pid=gene30690 - LG3 No
FV3G31260 fve B3 domain-containing protein Os07g0679700 (probable) transcript=eq;prot=eq;pid=gene28098 + LG3 No
FV6G08680 fve B3 domain-containing protein Os07g0679700 (probable) transcript=eq;prot=eq;pid=gene13877 + LG6 No
GM01G32810 gma 01 pid=16244986;transcript=eq;prot=eq;name=Glyma01g32810.1 - Gm01 No
GM02G40280 gma 02 pid=16249662;transcript=eq;prot=eq;name=Glyma02g40280.1 - Gm02 No
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