Gene family  

Sub-families
ORTHO011055 (18 genes in 13 species)
ORTHO011116 (18 genes in 11 species)
ORTHO012075 (16 genes in 13 species)
View all sub-families (8)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (4 genes)
cpa
Carica papaya (5 genes)
fve
Fragaria vesca (3 genes)
gma
Glycine max (12 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (3 genes)
mes
Manihot esculenta (6 genes)
mtr
Medicago truncatula (3 genes)
osa
Oryza sativa ssp. japonica (3 genes)
osaindica
Oryza sativa ssp. indica (5 genes)
ptr
Populus trichocarpa (9 genes)
rco
Ricinus communis (5 genes)
sbi
Sorghum bicolor (4 genes)
tca
Theobroma cacao (9 genes)
vvi
Vitis vinifera (4 genes)
zma
Zea mays (3 genes)



The gene family HOM001372 has 86 genes in 18 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 5, showing 20 records out of 86 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G10560 aly name=fgenesh1_pm.C_scaffold_1000879;pid=312099;prot=eq;tid=312099 - scaffold_1 No
AL1G10580 aly name=fgenesh2_kg.1__1131__AT1G10586.1;pid=471177;prot=eq;tid=471177 - scaffold_1 No
AL7G21730 aly name=fgenesh1_pm.C_scaffold_7001730;pid=329503;prot=eq;tid=329503 - scaffold_7 No
AT1G10585 ath basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.06 six leaves visible, 4 anthesis, LP.10 ten leaves visible, petal differentiation and expansion stage, LP.08 eight leaves visible; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G10586.1); Has 97 Blast hits to 96 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 97; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;basic helix-loop-helix (bHLH) DNA-binding superfamily protein transcript=eq;prot=eq; - 1 No
AT1G10586 ath basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: transcription regulator activity; INVOLVED IN: regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G10585.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;basic helix-loop-helix (bHLH) DNA-binding superfamily protein transcript=eq;prot=eq; - 1 No
AT4G20970 ath basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: defense response to fungus, regulation of transcription; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT1G10586.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;basic helix-loop-helix (bHLH) DNA-binding superfamily protein transcript=eq;prot=eq; + 4 No
BD2G00720 bdi bHLH transcription factor pid=Bradi2g00720.1;tid=Bradi2g00720.1;GeneName=Bradi2g00720;Name=BdbHLH47;transcript=eq;prot=eq + Bd2 No
BD2G00730 bdi bHLH transcription factor pid=Bradi2g00730.1;tid=Bradi2g00730.1;GeneName=Bradi2g00730;Name=BdbHLH48;transcript=eq;prot=eq + Bd2 No
BD2G00740 bdi bHLH transcription factor pid=Bradi2g00740.1;tid=Bradi2g00740.1;GeneName=Bradi2g00740;Name=BdbHLH49;transcript=eq;prot=eq + Bd2 No
BD3G08810 bdi pid=Bradi3g08810.1;tid=Bradi3g08810.1;GeneName=Bradi3g08810;transcript=eq;prot=eq + Bd3 No
CP00027G00330 cpa name=evm.TU.supercontig_27.34;pid=evm.TU.supercontig_27.34;prot=eq;transcript=eq + supercontig_27 No
CP00069G00280 cpa name=evm.TU.supercontig_69.28;pid=evm.TU.supercontig_69.28;prot=eq;transcript=eq - supercontig_69 No
CP00069G00300 cpa name=evm.TU.supercontig_69.30;pid=evm.TU.supercontig_69.30;prot=eq;transcript=eq - supercontig_69 No
CP00124G00360 cpa name=evm.TU.supercontig_124.36;pid=evm.TU.supercontig_124.36;prot=eq;transcript=eq - supercontig_124 No
CP01938G00020 cpa name=evm.TU.supercontig_1938.2;pid=evm.TU.supercontig_1938.2;prot=eq;transcript=eq + supercontig_1938 No
FV3G15640 fve Transcription factor bHLH36 (bHLH 36) (probable) transcript=eq;prot=eq;pid=gene02381 - LG3 No
FV5G06040 fve Transcription factor bHLH126 (bHLH 126) (probable) transcript=eq;prot=eq;pid=gene32171 - LG5 No
FV6G21600 fve Transcription factor bHLH36 (bHLH 36) (probable) transcript=eq;prot=eq;pid=gene17723 + LG6 No
GM04G35380 gma 04 pid=16256842;transcript=eq;prot=eq;name=Glyma04g35380.1 + Gm04 No
GM05G02110 gma 05 pid=16258027;transcript=eq;prot=eq;name=Glyma05g02110.1 - Gm05 No
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