Gene family  

Sub-families
ORTHO008905 (21 genes in 13 species)
ORTHO029363 (4 genes in 1 species)
ORTHO046739 (2 genes in 1 species)
View all sub-families (5)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (6 genes)
ath
Arabidopsis thaliana (4 genes)
cpa
Carica papaya (2 genes)
fve
Fragaria vesca (1 gene)
gma
Glycine max (6 genes)
lja
Lotus japonicus (13 genes)
mdo
Malus domestica (4 genes)
mes
Manihot esculenta (7 genes)
mtr
Medicago truncatula (20 genes)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (11 genes)
rco
Ricinus communis (1 gene)
tca
Theobroma cacao (3 genes)
vvi
Vitis vinifera (7 genes)



The gene family HOM001370 has 86 genes in 14 species (10 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 5, showing 20 records out of 86 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL0G01680 aly name=fgenesh1_pm.C_scaffold_9000101;pid=333073;prot=eq;tid=333073 - scaffold_9 No
AL3G03960 aly name=Al_scaffold_0003_384;pid=871743;prot=eq;tid=903256 + scaffold_3 Yes
AL3G03970 aly name=Al_scaffold_0003_385;pid=871744;prot=eq;tid=903257 + scaffold_3 No
AL3G03980 aly name=scaffold_300442.1;pid=896472;prot=eq;tid=927985 + scaffold_3 Yes
AL5G09860 aly name=scaffold_501018.1;pid=905314;prot=eq;tid=936827 + scaffold_5 No
AL7G38360 aly name=fgenesh1_pm.C_scaffold_7002746;pid=330519;prot=eq;tid=330519 - scaffold_7 No
AT2G07739 ath Ycf1 protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Ycf1 (InterPro:IPR008896); BEST Arabidopsis thaliana protein match is: Ycf1 protein (TAIR:ATMG00370.1); Has 1145 Blast hits to 1145 proteins in 726 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1145; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;Ycf1 protein transcript=eq;prot=eq; - 2 No
ATCG01000 ath hypothetical protein;Ycf1 protein transcript=eq;prot=eq; + chloroplast No
ATCG01130 ath hypothetical protein;Ycf1 protein transcript=eq;prot=eq; - chloroplast No
ATMG00370 ath hypothetical protein;Ycf1 protein transcript=eq;prot=eq; - mitochondrial No
CP35311G00010 cpa name=evm.TU.contig_35311.1;pid=evm.TU.contig_35311.1;prot=eq;warning=only partially equal protein + contig_35311 No
CPCG01120 cpa ycf1;hypothetical chloroplast RF1;protein_id=ABY86829.1; transl_table=11; - chloroplast No
FV0G59080 fve Putative membrane protein ycf1 (RF1) (similar to) transcript=eq;prot=eq;pid=gene32727 - scf0510636 No
GM01G28430 gma 01 pid=16244644;transcript=eq;prot=eq;name=Glyma01g28430.1 - Gm01 No
GM03G21720 gma 03 pid=16252001;transcript=eq;prot=eq;name=Glyma03g21720.1 + Gm03 No
GM13G08940 gma 13 pid=16290070;transcript=eq;prot=eq;name=Glyma13g08940.1 - Gm13 No
GM18G32200 gma 18 pid=16309454;transcript=eq;prot=eq;name=Glyma18g32200.1 + Gm18 No
GMCG00980 gma ycf1;hypothetical chloroplast RF1;protein_id=ABC25169.1; transl_table=11; + chloroplast No
GMCG01110 gma ycf1;hypothetical chloroplast RF1;protein_id=ABC25181.1; transl_table=11; - chloroplast No
LJ0G098120 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_031586;name=LjSGA_031586.0.1 - LjSGA_031586 No
<< previous
1 | 2 | 3 | 4 | 5 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier