Gene family  

Sub-families
ORTHO005332 (26 genes in 18 species)
ORTHO007189 (23 genes in 19 species)
ORTHO047646 (2 genes in 2 species)
View all sub-families (3)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (3 genes)
cpa
Carica papaya (5 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (2 genes)
gma
Glycine max (10 genes)
lja
Lotus japonicus (4 genes)
mdo
Malus domestica (5 genes)
mes
Manihot esculenta (5 genes)
mrcc299
Micromonas sp. RCC299 (2 genes)
mtr
Medicago truncatula (2 genes)
olu
Ostreococcus lucimarinus (2 genes)
osa
Oryza sativa ssp. japonica (4 genes)
osaindica
Oryza sativa ssp. indica (3 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (4 genes)
ptr
Populus trichocarpa (5 genes)
rco
Ricinus communis (4 genes)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (4 genes)
vvi
Vitis vinifera (8 genes)
zma
Zea mays (3 genes)



The gene family HOM001340 has 87 genes in 24 species (3 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 5, showing 20 records out of 87 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G14510 aly name=scaffold_101543.1;pid=888749;prot=eq;tid=920262 + scaffold_1 No
AL4G16050 aly name=fgenesh2_kg.4__1107__AT2G31190.1;pid=482047;prot=eq;tid=482047 - scaffold_4 No
AL7G29940 aly name=scaffold_703177.1;pid=915435;prot=eq;tid=946948 + scaffold_7 No
AT1G13770 ath ROOT UV-B SENSITIVE 3 (RUS3); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF647 (InterPro:IPR006968); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF647 (TAIR:AT3G45890.1); Has 450 Blast hits to 446 proteins in 132 species: Archae - 0; Bacteria - 0; Metazoa - 113; Fungi - 75; Plants - 194; Viruses - 0; Other Eukaryotes - 68 (source: NCBI BLink).;Protein of unknown function, DUF647 transcript=eq;prot=eq; + 1 No
AT2G31190 ath Encodes RUS2 (root UVB sensitive2), a DUF647-containing protein that is homologous to the RUS1 protein. RUS2 works with RUS1 in a root UV-B sensing pathway that plays a vital role in Arabidopsis early seedling morphogenesis and development. Required for auxin polar transport.;Protein of unknown function, DUF647 transcript=eq;prot=eq; - 2 No
AT4G14385 ath FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone H4 acetyltransferase, NuA4 complex, Eaf6 (InterPro:IPR015418); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). transcript=eq;prot=eq; - 4 No
BD1G70040 bdi pid=Bradi1g70040.1;tid=Bradi1g70040.1;GeneName=Bradi1g70040;transcript=eq;prot=eq + Bd1 No
BD3G52820 bdi pid=Bradi3g52820.1;tid=Bradi3g52820.1;GeneName=Bradi3g52820;transcript=eq;prot=eq + Bd3 No
BD5G15767 bdi pid=Bradi5g15767.1;tid=Bradi5g15767.1;GeneName=Bradi5g15767;transcript=eq;prot=eq - Bd5 No
CP00001G01220 cpa name=evm.TU.supercontig_1.122;pid=evm.TU.supercontig_1.122;prot=eq;transcript=eq - supercontig_1 No
CP00050G00210 cpa name=evm.TU.supercontig_50.21;pid=evm.TU.supercontig_50.21;prot=eq;transcript=eq - supercontig_50 No
CP00050G00220 cpa name=evm.TU.supercontig_50.22;pid=evm.TU.supercontig_50.22;prot=eq;transcript=eq - supercontig_50 No
CP00050G00230 cpa name=evm.TU.supercontig_50.23;pid=evm.TU.supercontig_50.23;prot=eq;transcript=eq - supercontig_50 No
CP00054G00620 cpa name=evm.TU.supercontig_54.62;pid=evm.TU.supercontig_54.62;prot=eq;transcript=eq + supercontig_54 No
CR06G08930 cre name=kg.chromosome_6_#_2034_#_XP_001695403.1;pid=307763;prot=eq;tid=307770;transcript=eq + chromosome_6 Yes
FV0G04140 fve UPF0420 protein C16orf58 homolog (probable) transcript=eq;prot=eq;pid=gene04609 + scf0513158 No
FV2G09110 fve UPF0420 protein C16orf58 homolog (probable) transcript=eq;prot=eq;pid=gene08083 + LG2 No
GM01G07190 gma 01 pid=16243685;transcript=eq;prot=eq;name=Glyma01g07190.1 - Gm01 No
GM02G13010 gma 02 pid=16247916;transcript=eq;prot=eq;name=Glyma02g13010.1 - Gm02 No
GM03G09020 gma 03 pid=16251522;transcript=eq;prot=eq;name=Glyma03g09020.1 + Gm03 No
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