Gene family  

Sub-families
ORTHO001160 (41 genes in 25 species)
ORTHO005269 (26 genes in 19 species)
ORTHO057381 (2 genes in 2 species)
View all sub-families (4)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (4 genes)
cpa
Carica papaya (3 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (3 genes)
gma
Glycine max (5 genes)
lja
Lotus japonicus (4 genes)
mdo
Malus domestica (6 genes)
mes
Manihot esculenta (4 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (5 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (3 genes)
osaindica
Oryza sativa ssp. indica (3 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (5 genes)
ptr
Populus trichocarpa (3 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (7 genes)
smo
Selaginella moellendorffii (3 genes)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (3 genes)
zma
Zea mays (12 genes)



The gene family HOM001338 has 87 genes in 25 species (2 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 5, showing 20 records out of 87 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G12760 aly name=fgenesh2_kg.3__1291__AT3G12280.1;pid=478590;prot=eq;tid=478590 - scaffold_3 No
AL6G38190 aly name=scaffold_603951.1;pid=911894;prot=eq;tid=943407 + scaffold_6 No
AT3G12280 ath Encodes a retinoblastoma homologue RETINOBLASTOMA-RELATED protein (RBR or RBR1). RBR controls nuclear proliferation in the female gametophyte. Also required for correct differentiation of male gametophytic cell types. Regulates stem cell maintenance in Arabidopsis roots. Involved in the determination of cell cycle arrest in G1 phase after sucrose starvation. RBR1 is also involved in regulation of imprinted genes. Together with MSI1 it represses the expression of MET1. This in turn activates expression of the imprinted genes FIS2 and FWA.;retinoblastoma-related 1 transcript=eq;prot=eq; - 3 No
AT4G03090 ath sequence-specific DNA binding;sequence-specific DNA binding transcription factors; FUNCTIONS IN: sequence-specific DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356); Has 162 Blast hits to 148 proteins in 59 species: Archae - 0; Bacteria - 10; Metazoa - 30; Fungi - 10; Plants - 59; Viruses - 0; Other Eukaryotes - 53 (source: NCBI BLink).;sequence-specific DNA binding;sequence-specific DNA binding transcription factors transcript=eq;prot=eq; - 4 No
BD3G41630 bdi retinoblastoma (RB) pid=Bradi3g41630.1;tid=Bradi3g41630.1;GeneName=Bradi3g41630;Name=BdRBR1;transcript=eq;prot=eq - Bd3 No
BD4G11517 bdi pid=Bradi4g11517.1;tid=Bradi4g11517.1;GeneName=Bradi4g11517;transcript=eq;prot=eq + Bd4 No
BD4G17210 bdi retinoblastoma (RB) pid=Bradi4g17210.1;tid=Bradi4g17210.1;GeneName=Bradi4g17210;Name=BdRBR2;transcript=eq;prot=eq + Bd4 No
BD4G36300 bdi pid=Bradi4g36300.1;tid=Bradi4g36300.1;GeneName=Bradi4g36300;transcript=eq;prot=eq + Bd4 No
CP00060G00350 cpa name=evm.TU.supercontig_60.35;pid=evm.TU.supercontig_60.35;prot=eq;transcript=eq + supercontig_60 No
CP00060G00360 cpa name=evm.TU.supercontig_60.36;pid=evm.TU.supercontig_60.36;prot=eq;transcript=eq + supercontig_60 No
CP00169G00340 cpa name=evm.TU.supercontig_169.34;pid=evm.TU.supercontig_169.34;prot=eq;transcript=eq - supercontig_169 No
CR06G01440 cre name=estExt_fgenesh2_pg.C_30419;pid=187248;prot=eq;tid=187248;transcript=eq + chromosome_6 No
FV2G26230 fve Suppressor protein SRP40 (probable) transcript=eq;prot=eq;pid=gene27766 - LG2 No
FV2G26270 fve Myosin heavy chain, striated muscle (probable) transcript=eq;prot=eq;pid=gene27770 - LG2 No
FV7G15540 fve Retinoblastoma-related protein (putative) transcript=eq;prot=eq;pid=gene13926 + LG7 No
GM04G36700 gma 04 pid=16256967;transcript=eq;prot=eq;name=Glyma04g36700.1 + Gm04 No
GM13G26170 gma 13 pid=16291614;transcript=eq;prot=eq;name=Glyma13g26170.1 - Gm13 No
GM13G40740 gma 13 pid=16293316;transcript=eq;prot=eq;name=Glyma13g40740.1 + Gm13 No
GM15G04700 gma 15 pid=16297646;transcript=eq;prot=eq;name=Glyma15g04700.1 - Gm15 No
GM15G36890 gma 15 pid=16300256;transcript=eq;prot=eq;name=Glyma15g36890.1 + Gm15 No
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