Gene family  

Sub-families
ORTHO004729 (27 genes in 18 species)
ORTHO006792 (24 genes in 21 species)
ORTHO022647 (5 genes in 5 species)
View all sub-families (5)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (4 genes)
cpa
Carica papaya (2 genes)
cre
Chlamydomonas reinhardtii (4 genes)
fve
Fragaria vesca (2 genes)
gma
Glycine max (6 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (6 genes)
mes
Manihot esculenta (6 genes)
mrcc299
Micromonas sp. RCC299 (2 genes)
mtr
Medicago truncatula (5 genes)
olu
Ostreococcus lucimarinus (4 genes)
osa
Oryza sativa ssp. japonica (4 genes)
osaindica
Oryza sativa ssp. indica (4 genes)
ota
Ostreococcus tauri (2 genes)
ppa
Physcomitrella patens (4 genes)
ptr
Populus trichocarpa (4 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (3 genes)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (4 genes)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (8 genes)



The gene family HOM001337 has 87 genes in 25 species (5 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 5, showing 20 records out of 87 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL8G23470 aly name=scaffold_802353.1;pid=918953;prot=eq;tid=950466 - scaffold_8 No
AL8G23480 aly name=scaffold_802354.1;pid=918954;prot=eq;tid=950467 - scaffold_8 No
AT5G07270 ath XB3 ortholog 3 in Arabidopsis thaliana (XBAT33); FUNCTIONS IN: ubiquitin-protein ligase activity; INVOLVED IN: N-terminal protein myristoylation; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: XB3 ortholog 2 in Arabidopsis thaliana (TAIR:AT5G57740.1); Has 53429 Blast hits to 23032 proteins in 965 species: Archae - 65; Bacteria - 4348; Metazoa - 27793; Fungi - 4781; Plants - 2636; Viruses - 380; Other Eukaryotes - 13426 (source: NCBI BLink).;XB3 ortholog 3 in Arabidopsis thaliana transcript=eq;prot=eq; + 5 No
AT5G57740 ath ubiquitin ligase;XB3 ortholog 2 in Arabidopsis thaliana transcript=eq;prot=eq; - 5 No
BD1G49680 bdi RING, subfamily ankyrin repeat amd RING finger protein, putative pid=Bradi1g49680.1;tid=Bradi1g49680.1;GeneName=Bradi1g49680;transcript=eq;prot=eq + Bd1 No
BD3G19170 bdi RING, subfamily ankyrin repeat-rich protein, putative pid=Bradi3g19170.1;tid=Bradi3g19170.1;GeneName=Bradi3g19170;transcript=eq;prot=eq - Bd3 No
BD3G31460 bdi RING, subfamily pollen ankyrin, putative pid=Bradi3g31460.1;tid=Bradi3g31460.1;GeneName=Bradi3g31460;transcript=eq;prot=eq - Bd3 No
BD3G53810 bdi RING, subfamily ankyrin repeat-rich protein, putative pid=Bradi3g53810.1;tid=Bradi3g53810.1;GeneName=Bradi3g53810;transcript=eq;prot=eq + Bd3 No
CP00075G00160 cpa name=evm.TU.supercontig_75.16;pid=evm.TU.supercontig_75.16;prot=eq;transcript=eq - supercontig_75 No
CP00107G00250 cpa name=evm.TU.supercontig_107.25;pid=evm.TU.supercontig_107.25;prot=eq;transcript=eq + supercontig_107 No
CR01G00280 cre name=pasa_Sanger_mRNA1666;pid=405104;prot=eq;tid=391858;transcript=eq - chromosome_1 Yes
CR02G06650 cre name=pg.chromosome_2_#_427;pid=324634;prot=eq;tid=324641;transcript=eq + chromosome_2 No
CR06G08190 cre name=kg.chromosome_6_#_1930_#_852777:2;pid=307659;prot=eq;tid=307666;transcript=eq - chromosome_6 Yes
CR06G08200 cre name=kg.chromosome_6_#_1931_#_XP_001695501.1;pid=307660;prot=eq;tid=307667;transcript=eq - chromosome_6 No
FV0G42370 fve Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B (Serine/threonine-protein phosphatase 6 regulatory subunit ARS-B) (probable) transcript=eq;prot=eq;pid=gene04992 - scf0513155 No
FV7G38920 fve Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B (Serine/threonine-protein phosphatase 6 regulatory subunit ARS-B) (probable) transcript=eq;prot=eq;pid=gene13305 - LG7 No
GM09G26560 gma 09 pid=16276320;transcript=eq;prot=eq;name=Glyma09g26560.1 - Gm09 No
GM10G38270 gma 10 pid=16281383;transcript=eq;prot=eq;name=Glyma10g38270.1 - Gm10 No
GM13G01480 gma 13 pid=16289334;transcript=eq;prot=eq;name=Glyma13g01480.1 + Gm13 No
GM16G32090 gma 16 pid=16303583;transcript=eq;prot=eq;name=Glyma16g32090.1 - Gm16 No
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