Gene family  

Sub-families
ORTHO001445 (38 genes in 24 species)
ORTHO002704 (31 genes in 25 species)
ORTHO075052 (2 genes in 1 species)
View all sub-families (3)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (4 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (3 genes)
cpa
Carica papaya (2 genes)
cre
Chlamydomonas reinhardtii (2 genes)
fve
Fragaria vesca (4 genes)
gma
Glycine max (4 genes)
lja
Lotus japonicus (3 genes)
mdo
Malus domestica (6 genes)
mes
Manihot esculenta (4 genes)
mrcc299
Micromonas sp. RCC299 (2 genes)
mtr
Medicago truncatula (7 genes)
olu
Ostreococcus lucimarinus (2 genes)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (5 genes)
ota
Ostreococcus tauri (2 genes)
ppa
Physcomitrella patens (3 genes)
ptr
Populus trichocarpa (4 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (4 genes)
tca
Theobroma cacao (4 genes)
vca
Volvox carteri (2 genes)
vvi
Vitis vinifera (6 genes)
zma
Zea mays (5 genes)



The gene family HOM001318 has 88 genes in 25 species (3 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 5, showing 20 records out of 88 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G12110 aly name=fgenesh2_kg.3__1217__AT3G11710.1;pid=478516;prot=eq;tid=478516 - scaffold_3 No
AL3G14030 aly name=fgenesh2_kg.3__1436__AT3G13490.1;pid=478735;prot=eq;tid=478735 - scaffold_3 No
AL3G30460 aly name=Al_scaffold_0003_2937;pid=874296;prot=eq;tid=905809 - scaffold_3 No
AL5G31450 aly name=Al_scaffold_0005_3007;pid=867528;prot=eq;tid=899041 - scaffold_5 No
AT3G11710 ath lysyl-tRNA synthetase 1 (ATKRS-1); FUNCTIONS IN: ATP binding, lysine-tRNA ligase activity; INVOLVED IN: lysyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class II (D/K/N) (InterPro:IPR004364), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Aminoacyl-tRNA synthetase, class II (D/K/N)-like (InterPro:IPR018150), Nucleic acid binding, OB-fold, tRNA/helicase-type (InterPro:IPR004365), Lysyl-tRNA synthetase, class II, C-terminal (InterPro:IPR018149), Lysyl-tRNA synthetase, class II (InterPro:IPR002313), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195); BEST Arabidopsis thaliana protein match is: Lysyl-tRNA synthetase, class II (TAIR:AT3G13490.1); Has 24040 Blast hits to 20328 proteins in 2969 species: Archae - 380; Bacteria - 16623; Metazoa - 629; Fungi - 774; Plants - 209; Viruses - 0; Other Eukaryotes - 5425 (source: NCBI BLink).;lysyl-tRNA synthetase 1 transcript=eq;prot=eq; - 3 No
AT3G13490 ath Encodes a dual targeted lysyl-tRNA ligase that is found both in the mitochondrion and the chloroplast. Plants mutated in this gene exhibit an ovule abortion phenotype.;Lysyl-tRNA synthetase, class II transcript=eq;prot=eq; - 3 No
AT3G30805 ath Class II aminoacyl-tRNA and biotin synthetases superfamily protein; FUNCTIONS IN: aminoacyl-tRNA ligase activity, nucleotide binding, lysine-tRNA ligase activity, ATP binding; INVOLVED IN: lysyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: cytoplasm; CONTAINS InterPro DOMAIN/s: Aminoacyl-tRNA synthetase, class II (D/K/N) (InterPro:IPR004364), Aminoacyl-tRNA synthetase, class II (D/K/N)-like (InterPro:IPR018150), Lysyl-tRNA synthetase, class II, C-terminal (InterPro:IPR018149); BEST Arabidopsis thaliana protein match is: lysyl-tRNA synthetase 1 (TAIR:AT3G11710.1); Has 6554 Blast hits to 6554 proteins in 2476 species: Archae - 109; Bacteria - 4905; Metazoa - 156; Fungi - 228; Plants - 111; Viruses - 0; Other Eukaryotes - 1045 (source: NCBI BLink).;Class II aminoacyl-tRNA and biotin synthetases superfamily protein transcript=eq;prot=eq; - 3 No
BD1G11876 bdi pid=Bradi1g11876.1;tid=Bradi1g11876.1;GeneName=Bradi1g11876;transcript=eq;prot=eq - Bd1 No
BD1G15370 bdi lysine-tRNA ligase activity, ATP binding (Blast2GO) pid=Bradi1g15370.2;tid=Bradi1g15370.2;GeneName=Bradi1g15370;transcript=eq;prot=eq + Bd1 No
BD3G49150 bdi lysine-tRNA ligase activity, ATP binding (Blast2GO) pid=Bradi3g49150.1;tid=Bradi3g49150.1;GeneName=Bradi3g49150;transcript=eq;prot=eq - Bd3 No
CP00095G00450 cpa name=evm.TU.supercontig_95.45;pid=evm.TU.supercontig_95.45;prot=eq;transcript=eq - supercontig_95 No
CP00119G00370 cpa name=evm.TU.supercontig_119.37;pid=evm.TU.supercontig_119.37;prot=eq;transcript=eq - supercontig_119 No
CR03G02730 cre name=estExt_gwp_1W.C_340031;pid=138493;prot=eq;tid=138493;transcript=eq + chromosome_3 No
CR06G09900 cre name=e_gwW.12.13.1;pid=115135;prot=eq;tid=115135;transcript=eq + chromosome_6 No
FV3G21610 fve Lysyl-tRNA synthetase (LysRS) (similar to) transcript=eq;prot=eq;pid=gene07957 + LG3 No
FV3G36010 fve Lysyl-tRNA synthetase (LysRS) (similar to) transcript=eq;prot=eq;pid=gene01599 - LG3 No
FV4G03590 fve Lysyl-tRNA synthetase (LysRS) (similar to) transcript=eq;prot=eq;pid=gene17007 + LG4 No
FV5G06920 fve Lysyl-tRNA synthetase (LysRS) (similar to) transcript=eq;prot=eq;pid=gene20360 - LG5 No
GM03G25750 gma 03 pid=16252345;transcript=eq;prot=eq;name=Glyma03g25750.1 - Gm03 No
GM10G08040 gma 10 pid=16278945;transcript=eq;prot=eq;name=Glyma10g08040.1 - Gm10 No
<< previous
1 | 2 | 3 | 4 | 5 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier