Gene family  

Sub-families
ORTHO004576 (27 genes in 20 species)
ORTHO011835 (16 genes in 12 species)
ORTHO012311 (16 genes in 10 species)
View all sub-families (10)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (4 genes)
ath
Arabidopsis thaliana (4 genes)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (2 genes)
fve
Fragaria vesca (3 genes)
gma
Glycine max (9 genes)
lja
Lotus japonicus (4 genes)
mdo
Malus domestica (8 genes)
mes
Manihot esculenta (6 genes)
mtr
Medicago truncatula (2 genes)
osa
Oryza sativa ssp. japonica (9 genes)
osaindica
Oryza sativa ssp. indica (8 genes)
ppa
Physcomitrella patens (3 genes)
ptr
Populus trichocarpa (6 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (6 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (3 genes)
vvi
Vitis vinifera (3 genes)
zma
Zea mays (3 genes)



The gene family HOM001313 has 88 genes in 20 species (2 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 5, showing 20 records out of 88 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL2G01500 aly name=fgenesh2_kg.2__120__AT1G63650.2;pid=474990;prot=eq;tid=474990 - scaffold_2 No
AL6G31920 aly name=fgenesh2_kg.6__2968__AT4G09820.1;pid=489834;prot=eq;tid=489834 + scaffold_6 No
AL6G41150 aly name=fgenesh1_pm.C_scaffold_6002945;pid=327725;prot=eq;tid=327725 + scaffold_6 No
AL7G36380 aly name=fgenesh2_kg.7__3280__AT5G41315.1;pid=493847;prot=eq;tid=493847 - scaffold_7 No
AT1G63650 ath Mutant has reduced trichomes, anthocyanin, and seed coat mucilage and abnormally patterned stomates. Encodes a bHLH Transcription Factor 1. The protein is functionally redundant with GL3 and TT8 and interacts with TTG1, the myb proteins GL1, PAP1 and 2, CPC and TRY, and it will form heterodimers with GL3. Expression in N (non-hair cell forming) cell layers is negatively regulated by WER. Expression in H cells (hair cell forming) is promoted by CPC/TRY.;basic helix-loop-helix (bHLH) DNA-binding superfamily protein transcript=eq;prot=eq; + 1 No
AT4G00480 ath MYC-related protein with a basic helix-loop-helix motif at the C-terminus and a region similar to the maize B/R family at the N-terminus;basic helix-loop-helix (bHLH) DNA-binding superfamily protein transcript=eq;prot=eq; - 4 No
AT4G09820 ath TT8 is a regulation factor that acts in a concerted action with TT1, PAP1 and TTG1 on the regulation of flavonoid pathways, namely proanthocyanidin and anthocyanin biosynthesis. Affects dihydroflavonol 4-reductase gene expression. It is thought that a ternary complex composed of TT2, TT8 and TTG1 is necessary for correct expression of BAN in seed endothelium. Also important for important for marginal trichome development.;basic helix-loop-helix (bHLH) DNA-binding superfamily protein transcript=eq;prot=eq; + 4 No
AT5G41315 ath encodes a basic helix loop helix domain protein that interacts with GL1 in trichome development.;basic helix-loop-helix (bHLH) DNA-binding superfamily protein transcript=eq;prot=eq; + 5 No
BD1G54070 bdi bHLH transcription factor pid=Bradi1g54070.1;tid=Bradi1g54070.1;GeneName=Bradi1g54070;Name=BdbHLH31;transcript=eq;prot=eq - Bd1 No
CP00052G00240 cpa name=evm.TU.supercontig_52.24;pid=evm.TU.supercontig_52.24;prot=eq;transcript=eq + supercontig_52 No
CP00537G00020 cpa name=evm.TU.supercontig_537.2;pid=evm.TU.supercontig_537.2;prot=eq;transcript=eq + supercontig_537 No
FV2G25270 fve Transcription factor TT8 (bHLH 42) (similar to) transcript=eq;prot=eq;pid=gene27827 - LG2 No
FV5G02910 fve Transcription factor GLABRA 3 (bHLH 1) (putative) transcript=eq;prot=eq;pid=gene32494 + LG5 No
FV7G08120 fve Transcription factor GLABRA 3 (bHLH 1) (probable) transcript=eq;prot=eq;pid=gene19321 - LG7 No
GM02G16670 gma 02 pid=16248309;transcript=eq;prot=eq;name=Glyma02g16670.1 - Gm02 No
GM03G01180 gma 03 pid=16250744;transcript=eq;prot=eq;name=Glyma03g01180.1 + Gm03 No
GM03G30940 gma 03 pid=16252896;transcript=eq;prot=eq;name=Glyma03g30940.1 + Gm03 No
GM05G37770 gma 05 pid=16261057;transcript=eq;prot=eq;name=Glyma05g37770.1 - Gm05 No
GM07G07740 gma 07 pid=16266562;transcript=eq;prot=eq;name=Glyma07g07740.1 + Gm07 No
GM08G01810 gma 08 pid=16269615;transcript=eq;prot=eq;name=Glyma08g01810.1 + Gm08 No
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