Gene family  

Sub-families
ORTHO001220 (40 genes in 23 species)
ORTHO003312 (29 genes in 20 species)
ORTHO026902 (4 genes in 4 species)
View all sub-families (5)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (5 genes)
ath
Arabidopsis thaliana (4 genes)
bdi
Brachypodium distachyon (6 genes)
cpa
Carica papaya (2 genes)
cre
Chlamydomonas reinhardtii (4 genes)
fve
Fragaria vesca (2 genes)
gma
Glycine max (4 genes)
lja
Lotus japonicus (6 genes)
mdo
Malus domestica (5 genes)
mes
Manihot esculenta (4 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (2 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (6 genes)
osaindica
Oryza sativa ssp. indica (7 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (5 genes)
ptr
Populus trichocarpa (4 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (2 genes)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (9 genes)



The gene family HOM001299 has 89 genes in 25 species (3 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 5, showing 20 records out of 89 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G18200 aly name=scaffold_101927.1;pid=889133;prot=eq;tid=920646 + scaffold_1 No
AL1G25150 aly name=fgenesh2_kg.1__2543__AT1G23310.1;pid=472589;prot=eq;tid=472589 - scaffold_1 No
AL2G08030 aly name=scaffold_200813.1;pid=893739;prot=eq;tid=925252 + scaffold_2 No
AL2G19130 aly name=scaffold_201947.1;pid=894873;prot=eq;tid=926386 + scaffold_2 No
AL2G21140 aly name=fgenesh2_kg.2__1492__AT1G72330.1;pid=476362;prot=eq;tid=476362 + scaffold_2 No
AT1G17290 ath Encodes for alanine aminotransferase (ALAAT1), involved in alanine catabolism during plants recovery from hypoxia;alanine aminotransferas transcript=eq;prot=eq; + 1 No
AT1G23310 ath Identified by cloning the gene that corresponded to a purified protein having glyoxylate aminotransferase activity. Localized to the peroxisome and thought to be involved in photorespiration/ metabolic salvage pathway.;glutamate:glyoxylate aminotransferase transcript=eq;prot=eq; - 1 No
AT1G70580 ath Encodes a protein with glyoxylate aminotransferase activity. It can act on a number of different small substrates and amino acids in vitro.;alanine-2-oxoglutarate aminotransferase 2 transcript=eq;prot=eq; + 1 No
AT1G72330 ath Encodes for alanine aminotransferase ALAAT2.;alanine aminotransferase 2 transcript=eq;prot=eq; + 1 No
BD0G00010 bdi pid=Bradi0040s00200.1;tid=Bradi0040s00200.1;GeneName=Bradi0040s00200;transcript=eq;prot=eq + scaffold_40 No
BD1G20995 bdi pid=Bradi1g20995.1;tid=Bradi1g20995.1;GeneName=Bradi1g20995;transcript=eq;prot=eq - Bd1 No
BD1G59220 bdi alanine transaminase activity (Blast2GO) pid=Bradi1g59220.1;tid=Bradi1g59220.1;GeneName=Bradi1g59220;transcript=eq;prot=eq - Bd1 No
BD3G23160 bdi alanine transaminase activity (Blast2GO) pid=Bradi3g23160.1;tid=Bradi3g23160.1;GeneName=Bradi3g23160;transcript=eq;prot=eq + Bd3 No
BD4G31003 bdi pid=Bradi4g31003.1;tid=Bradi4g31003.1;GeneName=Bradi4g31003;transcript=eq;prot=eq + Bd4 No
BD5G20427 bdi pid=Bradi5g20427.2;tid=Bradi5g20427.2;GeneName=Bradi5g20427;transcript=eq;prot=eq + Bd5 No
CP00025G01930 cpa name=evm.TU.supercontig_25.193;pid=evm.TU.supercontig_25.193;prot=eq;transcript=eq - supercontig_25 No
CP00033G00060 cpa name=evm.TU.supercontig_33.6;pid=evm.TU.supercontig_33.6;prot=eq;transcript=eq + supercontig_33 No
CR06G07560 cre name=estExt_fgenesh2_kg.C_260049;pid=184482;prot=eq;tid=184482;transcript=eq + chromosome_6 Yes
CR06G07570 cre name=estExt_fgenesh2_pg.C_260132;pid=191703;prot=eq;tid=191703;transcript=eq + chromosome_6 No
CR07G00990 cre name=pasa_Sanger_mRNA28974;pid=392484;prot=eq;tid=419463;transcript=eq + chromosome_7 Yes
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