Gene family  

Sub-families
ORTHO004334 (27 genes in 16 species)
ORTHO004418 (27 genes in 17 species)
ORTHO025860 (4 genes in 4 species)
View all sub-families (7)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (5 genes)
ath
Arabidopsis thaliana (6 genes)
bdi
Brachypodium distachyon (4 genes)
cpa
Carica papaya (4 genes)
fve
Fragaria vesca (8 genes)
gma
Glycine max (9 genes)
lja
Lotus japonicus (5 genes)
mdo
Malus domestica (3 genes)
mes
Manihot esculenta (4 genes)
mtr
Medicago truncatula (4 genes)
osa
Oryza sativa ssp. japonica (3 genes)
osaindica
Oryza sativa ssp. indica (4 genes)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (6 genes)
rco
Ricinus communis (5 genes)
sbi
Sorghum bicolor (3 genes)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (8 genes)
vvi
Vitis vinifera (3 genes)
zma
Zea mays (3 genes)



The gene family HOM001293 has 90 genes in 20 species (14 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 5, showing 20 records out of 90 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL2G25690 aly name=fgenesh2_kg.2__1965__AT1G76750.1;pid=476835;prot=eq;tid=476835 + scaffold_2 No
AL4G00970 aly name=scaffold_400105.1;pid=900604;prot=eq;tid=932117 - scaffold_4 No
AL4G00980 aly name=scaffold_400106.1;pid=900605;prot=eq;tid=932118 - scaffold_4 No
AL7G01280 aly name=fgenesh2_kg.7__144__AT4G39340.1;pid=490711;prot=eq;tid=490711 - scaffold_7 No
AL8G31470 aly name=scaffold_803196.1;pid=919796;prot=eq;tid=951309 - scaffold_8 No
AT1G76750 ath Protein of unknown function (DUF1278); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1278 (InterPro:IPR010701); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1278) (TAIR:AT4G39340.1); Has 86 Blast hits to 86 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 86; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;Protein of unknown function (DUF1278) transcript=eq;prot=eq; + 1 No
AT2G21740 ath Protein of unknown function (DUF1278); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: embryo, egg cell; EXPRESSED DURING: C globular stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1278 (InterPro:IPR010701); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1278) (TAIR:AT2G21750.1); Has 82 Blast hits to 82 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;Protein of unknown function (DUF1278) transcript=eq;prot=eq; - 2 No
AT2G21750 ath Protein of unknown function (DUF1278); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1278 (InterPro:IPR010701); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1278) (TAIR:AT2G21740.1); Has 78 Blast hits to 78 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;Protein of unknown function (DUF1278) transcript=eq;prot=eq; - 2 No
AT4G23330 ath BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 3A (TAIR:AT4G11420.1); Has 63 Blast hits to 55 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). transcript=eq;prot=eq; + 4 Yes
AT4G39340 ath Protein of unknown function (DUF1278); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1278 (InterPro:IPR010701); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1278) (TAIR:AT2G21750.1); Has 101 Blast hits to 101 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;Protein of unknown function (DUF1278) transcript=eq;prot=eq; - 4 No
AT5G64720 ath Protein of unknown function (DUF1278); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: embryo; EXPRESSED DURING: C globular stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1278 (InterPro:IPR010701); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1278) (TAIR:AT2G21740.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Protein of unknown function (DUF1278) transcript=eq;prot=eq; - 5 No
BD1G65190 bdi pid=Bradi1g65190.1;tid=Bradi1g65190.1;GeneName=Bradi1g65190;transcript=eq;prot=eq - Bd1 No
BD2G28070 bdi pid=Bradi2g28070.1;tid=Bradi2g28070.1;GeneName=Bradi2g28070;transcript=eq;prot=eq + Bd2 No
BD4G23900 bdi pid=Bradi4g23900.1;tid=Bradi4g23900.1;GeneName=Bradi4g23900;transcript=eq;prot=eq - Bd4 No
BD4G24640 bdi pid=Bradi4g24640.1;tid=Bradi4g24640.1;GeneName=Bradi4g24640;transcript=eq;prot=eq + Bd4 No
CP00049G01020 cpa name=evm.TU.supercontig_49.102;pid=evm.TU.supercontig_49.102;prot=eq;transcript=eq + supercontig_49 No
CP00049G01030 cpa name=evm.TU.supercontig_49.103;pid=evm.TU.supercontig_49.103;prot=eq;transcript=eq + supercontig_49 No
CP00072G00320 cpa name=evm.TU.supercontig_72.32;pid=evm.TU.supercontig_72.32;prot=eq;transcript=eq - supercontig_72 No
CP00537G00010 cpa name=evm.TU.supercontig_537.1;pid=evm.TU.supercontig_537.1;prot=eq;transcript=eq + supercontig_537 Yes
FV1G20600 fve Putative sporulation transcription regulator whiA (probable) transcript=eq;prot=eq;pid=gene17848 - LG1 No
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