Gene family  

Sub-families
ORTHO002226 (33 genes in 18 species)
ORTHO009211 (20 genes in 19 species)
ORTHO010793 (18 genes in 16 species)
View all sub-families (8)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (5 genes)
ath
Arabidopsis thaliana (5 genes)
bdi
Brachypodium distachyon (5 genes)
cpa
Carica papaya (3 genes)
cre
Chlamydomonas reinhardtii (2 genes)
fve
Fragaria vesca (4 genes)
gma
Glycine max (6 genes)
lja
Lotus japonicus (4 genes)
mdo
Malus domestica (9 genes)
mes
Manihot esculenta (4 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (5 genes)
osaindica
Oryza sativa ssp. indica (6 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (3 genes)
ptr
Populus trichocarpa (3 genes)
rco
Ricinus communis (4 genes)
sbi
Sorghum bicolor (5 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (4 genes)
vca
Volvox carteri (2 genes)
vvi
Vitis vinifera (3 genes)
zma
Zea mays (4 genes)



The gene family HOM001282 has 90 genes in 24 species (3 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 5, showing 20 records out of 90 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL2G01130 aly name=fgenesh2_kg.2__94__AT1G63940.4;pid=474964;prot=eq;tid=474964 - scaffold_2 No
AL3G10190 aly name=fgenesh2_kg.3__1022__AT3G09940.1;pid=478321;prot=eq;tid=478321 - scaffold_3 No
AL5G06920 aly name=scaffold_500738.1;pid=905034;prot=eq;tid=936547 + scaffold_5 No
AL5G22790 aly name=fgenesh2_kg.5__1651__AT3G52880.1;pid=485659;prot=eq;tid=485659 - scaffold_5 No
AL6G02900 aly name=fgenesh2_kg.6__276__AT5G03630.1;pid=487142;prot=eq;tid=487142 - scaffold_6 No
AT1G63940 ath monodehydroascorbate reductase 6 (MDAR6); FUNCTIONS IN: ATP binding; INVOLVED IN: response to cadmium ion, response to cold; LOCATED IN: mitochondrion, stromule, chloroplast; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327); BEST Arabidopsis thaliana protein match is: monodehydroascorbate reductase 1 (TAIR:AT3G52880.1); Has 32816 Blast hits to 32747 proteins in 3098 species: Archae - 747; Bacteria - 25716; Metazoa - 998; Fungi - 665; Plants - 641; Viruses - 0; Other Eukaryotes - 4049 (source: NCBI BLink).;monodehydroascorbate reductase 6 transcript=eq;prot=eq; + 1 No
AT3G09940 ath Encodes a member of the monodehydroascorbate reductase gene family. Critical for a mutualistic symbiosis between the host Arabidopsis and the root colonizing fungus Piriformospora indica.;monodehydroascorbate reductase transcript=eq;prot=eq; - 3 No
AT3G27820 ath Encodes a peroxisome membrane-bound monodehydroascorbate reductase, involved in the ascorbate-glutathione cycle which removes toxic H2O2;monodehydroascorbate reductase 4 transcript=eq;prot=eq; + 3 No
AT3G52880 ath Encodes a peroxisomal monodehydroascorbate reductase, involved in the ascorbate-glutathione cycle which removes toxic H2O2;monodehydroascorbate reductase 1 transcript=eq;prot=eq; - 3 No
AT5G03630 ath ATMDAR2; FUNCTIONS IN: monodehydroascorbate reductase (NADH) activity; INVOLVED IN: response to cadmium ion, response to zinc ion, response to salt stress; LOCATED IN: cytosol; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: FAD/NAD-linked reductase, dimerisation (InterPro:IPR016156), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327); BEST Arabidopsis thaliana protein match is: monodehydroascorbate reductase 1 (TAIR:AT3G52880.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Pyridine nucleotide-disulphide oxidoreductase family protein transcript=eq;prot=eq; - 5 No
BD3G17120 bdi iron ion binding, FAD binding, caspase activator activity, thioredoxin-disulfide reductase activity (Blast2GO) pid=Bradi3g17120.1;tid=Bradi3g17120.1;GeneName=Bradi3g17120;transcript=eq;prot=eq - Bd3 No
BD3G42760 bdi iron ion binding, FAD binding, caspase activator activity (Blast2GO) pid=Bradi3g42760.1;tid=Bradi3g42760.1;GeneName=Bradi3g42760;transcript=eq;prot=eq + Bd3 No
BD3G52856 bdi pid=Bradi3g52856.1;tid=Bradi3g52856.1;GeneName=Bradi3g52856;transcript=eq;prot=eq - Bd3 No
BD3G52862 bdi pid=Bradi3g52862.1;tid=Bradi3g52862.1;GeneName=Bradi3g52862;transcript=eq;prot=eq - Bd3 No
BD4G38430 bdi FAD binding (Blast2GO) pid=Bradi4g38430.1;tid=Bradi4g38430.1;GeneName=Bradi4g38430;transcript=eq;prot=eq + Bd4 No
CP00005G00530 cpa name=evm.TU.supercontig_5.53;pid=evm.TU.supercontig_5.53;prot=eq;transcript=eq - supercontig_5 No
CP00186G00060 cpa name=evm.TU.supercontig_186.6;pid=evm.TU.supercontig_186.6;prot=eq;transcript=eq + supercontig_186 No
CP02231G00010 cpa name=evm.TU.supercontig_2231.1;pid=evm.TU.supercontig_2231.1;prot=eq;transcript=eq - supercontig_2231 No
CR06G04750 cre name=estExt_gwp_1W.C_30317;pid=134305;prot=eq;tid=134305;transcript=eq + chromosome_6 No
CR17G03390 cre name=estExt_gwp_1W.C_540092;pid=139735;prot=eq;tid=139735;transcript=eq + chromosome_17 No
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