Gene family  

Sub-families
ORTHO004006 (28 genes in 24 species)
ORTHO005062 (26 genes in 18 species)
ORTHO012181 (16 genes in 15 species)
View all sub-families (7)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (3 genes)
cpa
Carica papaya (4 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (5 genes)
gma
Glycine max (7 genes)
lja
Lotus japonicus (4 genes)
mdo
Malus domestica (6 genes)
mes
Manihot esculenta (5 genes)
mrcc299
Micromonas sp. RCC299 (2 genes)
mtr
Medicago truncatula (3 genes)
olu
Ostreococcus lucimarinus (3 genes)
osa
Oryza sativa ssp. japonica (4 genes)
osaindica
Oryza sativa ssp. indica (4 genes)
ota
Ostreococcus tauri (2 genes)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (8 genes)
rco
Ricinus communis (5 genes)
sbi
Sorghum bicolor (3 genes)
smo
Selaginella moellendorffii (3 genes)
tca
Theobroma cacao (3 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (4 genes)
zma
Zea mays (3 genes)



The gene family HOM001278 has 91 genes in 25 species (3 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 5, showing 20 records out of 91 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL4G09960 aly name=scaffold_401001.1;pid=901500;prot=eq;tid=933013 + scaffold_4 No
AL6G11990 aly name=fgenesh2_kg.6__1189__AT5G12120.1;pid=488055;prot=eq;tid=488055 - scaffold_6 No
AL6G19780 aly name=scaffold_602044.1;pid=909987;prot=eq;tid=941500 + scaffold_6 No
AT2G26920 ath Ubiquitin-associated/translation elongation factor EF1B protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal (InterPro:IPR000449), Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940), UBA-like (InterPro:IPR009060); BEST Arabidopsis thaliana protein match is: Ubiquitin-associated/translation elongation factor EF1B protein (TAIR:AT5G12120.1); Has 396 Blast hits to 387 proteins in 96 species: Archae - 0; Bacteria - 14; Metazoa - 132; Fungi - 65; Plants - 58; Viruses - 1; Other Eukaryotes - 126 (source: NCBI BLink).;Ubiquitin-associated/translation elongation factor EF1B protein transcript=eq;prot=eq; + 2 No
AT5G12120 ath Ubiquitin-associated/translation elongation factor EF1B protein; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin-associated/translation elongation factor EF1B, N-terminal, eukaryote (InterPro:IPR015940); BEST Arabidopsis thaliana protein match is: Ubiquitin-associated/translation elongation factor EF1B protein (TAIR:AT2G26920.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;Ubiquitin-associated/translation elongation factor EF1B protein transcript=eq;prot=eq; - 5 No
AT5G19500 ath Tryptophan/tyrosine permease; CONTAINS InterPro DOMAIN/s: Tryptophan/tyrosine permease (InterPro:IPR018227); BEST Arabidopsis thaliana protein match is: Tryptophan/tyrosine permease (TAIR:AT2G33260.1); Has 3446 Blast hits to 3440 proteins in 699 species: Archae - 29; Bacteria - 3077; Metazoa - 10; Fungi - 2; Plants - 199; Viruses - 0; Other Eukaryotes - 129 (source: NCBI BLink).;Tryptophan/tyrosine permease transcript=eq;prot=eq; + 5 No
BD1G18660 bdi L-amino acid transmembrane transporter activity (Blast2GO) pid=Bradi1g18660.1;tid=Bradi1g18660.1;GeneName=Bradi1g18660;transcript=eq;prot=eq + Bd1 No
BD1G67830 bdi L-amino acid transmembrane transporter activity (Blast2GO) pid=Bradi1g67830.1;tid=Bradi1g67830.1;GeneName=Bradi1g67830;transcript=eq;prot=eq - Bd1 No
BD2G25540 bdi pid=Bradi2g25540.1;tid=Bradi2g25540.1;GeneName=Bradi2g25540;transcript=eq;prot=eq + Bd2 No
CP00034G01900 cpa name=evm.TU.supercontig_34.191;pid=evm.TU.supercontig_34.191;prot=eq;transcript=eq - supercontig_34 No
CP00034G01910 cpa name=evm.TU.supercontig_34.192;pid=evm.TU.supercontig_34.192;prot=eq;transcript=eq - supercontig_34 No
CP02357G00010 cpa name=evm.TU.supercontig_2357.1;pid=evm.TU.supercontig_2357.1;prot=eq;transcript=eq - supercontig_2357 No
CP02357G00020 cpa name=evm.TU.supercontig_2357.2;pid=evm.TU.supercontig_2357.2;prot=eq;transcript=eq - supercontig_2357 No
CR13G02120 cre name=SKA_Chlre2_kg.scaffold_2000189;pid=205979;prot=eq;tid=205984;transcript=eq - chromosome_13 No
FV0G37180 fve DNA topoisomerase 3-alpha (probable) transcript=eq;prot=eq;pid=gene27897 - scf0513124 Yes
FV1G20070 fve DNA topoisomerase 3-alpha (similar to) transcript=eq;prot=eq;pid=gene20235 - LG1 Yes
FV2G47570 fve Tyrosine-specific transport protein (probable) transcript=eq;prot=eq;pid=gene15377 + LG2 No
FV4G17850 fve Radixin (probable) transcript=eq;prot=eq;pid=gene06628 + LG4 No
FV7G24010 fve Tyrosine-specific transport protein (probable) transcript=eq;prot=eq;pid=gene23308 - LG7 No
GM02G44480 gma 02 pid=16250156;transcript=eq;prot=eq;name=Glyma02g44480.1 - Gm02 No
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