Gene family  

Sub-families
ORTHO001531 (37 genes in 25 species)
ORTHO007633 (22 genes in 22 species)
ORTHO035528 (3 genes in 1 species)
View all sub-families (6)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (5 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (3 genes)
cpa
Carica papaya (3 genes)
cre
Chlamydomonas reinhardtii (2 genes)
fve
Fragaria vesca (2 genes)
gma
Glycine max (3 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (15 genes)
mes
Manihot esculenta (4 genes)
mrcc299
Micromonas sp. RCC299 (2 genes)
mtr
Medicago truncatula (2 genes)
olu
Ostreococcus lucimarinus (2 genes)
osa
Oryza sativa ssp. japonica (3 genes)
osaindica
Oryza sativa ssp. indica (6 genes)
ota
Ostreococcus tauri (2 genes)
ppa
Physcomitrella patens (3 genes)
ptr
Populus trichocarpa (4 genes)
rco
Ricinus communis (11 genes)
sbi
Sorghum bicolor (4 genes)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (3 genes)
vca
Volvox carteri (2 genes)
vvi
Vitis vinifera (3 genes)
zma
Zea mays (2 genes)



The gene family HOM001271 has 91 genes in 25 species (7 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 5, showing 20 records out of 91 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G12160 aly name=fgenesh2_kg.1__1288__AT1G11870.2;pid=471334;prot=eq;tid=471334 + scaffold_1 No
AL1G37880 aly name=fgenesh1_pm.C_scaffold_1002832;pid=314052;prot=eq;tid=314052 - scaffold_1 No
AL6G27780 aly name=fgenesh2_kg.6__2713__AT5G27470.1;pid=489579;prot=eq;tid=489579 - scaffold_6 No
AL6G27790 aly name=scaffold_602894.1;pid=910837;prot=eq;tid=942350 - scaffold_6 No
AL8G07140 aly name=fgenesh1_pm.C_scaffold_8000421;pid=331078;prot=eq;tid=331078 + scaffold_8 No
AT1G11870 ath Seryl-tRNA synthetase targeted to chloroplasts and mitochondria. Its inactivation causes developmental arrest of chloroplasts and mitochondria in Nicotiana benthamiana.;Seryl-tRNA synthetase transcript=eq;prot=eq; + 1 No
AT5G27470 ath seryl-tRNA synthetase / serine--tRNA ligase; FUNCTIONS IN: serine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: response to cadmium ion, seryl-tRNA aminoacylation; LOCATED IN: cytosol; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: tRNA-binding arm (InterPro:IPR010978), Seryl-tRNA synthetase, class IIa, N-terminal (InterPro:IPR015866), Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain (InterPro:IPR002314), Seryl-tRNA synthetase, class IIa (InterPro:IPR002317), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195), Seryl-tRNA synthetase, class IIa, C-terminal (InterPro:IPR018156); BEST Arabidopsis thaliana protein match is: Seryl-tRNA synthetase (TAIR:AT1G11870.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;seryl-tRNA synthetase / serine--tRNA ligase transcript=eq;prot=eq; + 5 No
BD1G71300 bdi serine-tRNA ligase activity, ATP binding (Blast2GO) pid=Bradi1g71300.1;tid=Bradi1g71300.1;GeneName=Bradi1g71300;transcript=eq;prot=eq - Bd1 No
BD2G08900 bdi serine-tRNA ligase activity, ATP binding (Blast2GO) pid=Bradi2g08900.1;tid=Bradi2g08900.1;GeneName=Bradi2g08900;transcript=eq;prot=eq + Bd2 No
BD4G13940 bdi serine-tRNA ligase activity, ATP binding (Blast2GO) pid=Bradi4g13940.1;tid=Bradi4g13940.1;GeneName=Bradi4g13940;transcript=eq;prot=eq - Bd4 No
CP00026G01760 cpa name=evm.TU.supercontig_26.176;pid=evm.TU.supercontig_26.176;prot=eq;transcript=eq - supercontig_26 No
CP00036G01710 cpa name=evm.TU.supercontig_36.171;pid=evm.TU.supercontig_36.171;prot=eq;transcript=eq + supercontig_36 No
CP00048G01940 cpa name=evm.TU.supercontig_48.194;pid=evm.TU.supercontig_48.194;prot=eq;transcript=eq - supercontig_48 No
CR02G02100 cre name=e_gwH.7.242.1;pid=97141;prot=eq;tid=97141;transcript=eq - chromosome_2 No
CR03G08500 cre name=OVA_chlre3.14.21.1.1;pid=206186;prot=eq;tid=206191;transcript=eq - chromosome_3 No
FV5G19760 fve Seryl-tRNA synthetase (SerRS) (probable) transcript=eq;prot=eq;pid=gene11901 + LG5 No
FV6G05890 fve Seryl-tRNA synthetase (SerRS) (putative) transcript=eq;prot=eq;pid=gene22561 - LG6 No
GM04G10750 gma 04 pid=16255559;transcript=eq;prot=eq;name=Glyma04g10750.1 - Gm04 No
GM10G29600 gma 10 pid=16280366;transcript=eq;prot=eq;name=Glyma10g29600.1 - Gm10 No
GM20G37700 gma 20 pid=16318204;transcript=eq;prot=eq;name=Glyma20g37700.1 + Gm20 No
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