Gene family  

Sub-families
ORTHO002367 (32 genes in 25 species)
ORTHO010208 (19 genes in 15 species)
ORTHO010866 (18 genes in 16 species)
View all sub-families (7)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (4 genes)
ath
Arabidopsis thaliana (4 genes)
bdi
Brachypodium distachyon (5 genes)
cpa
Carica papaya (3 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (3 genes)
gma
Glycine max (6 genes)
lja
Lotus japonicus (6 genes)
mdo
Malus domestica (7 genes)
mes
Manihot esculenta (6 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (4 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (5 genes)
osaindica
Oryza sativa ssp. indica (6 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (4 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (4 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (3 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (4 genes)
zma
Zea mays (6 genes)



The gene family HOM001267 has 91 genes in 25 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 5, showing 20 records out of 91 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G19350 aly name=fgenesh2_kg.1__2016__AT1G18440.1;pid=472062;prot=eq;tid=472062 + scaffold_1 No
AL6G16000 aly name=fgenesh2_kg.6__1598__AT5G16140.1;pid=488464;prot=eq;tid=488464 - scaffold_6 No
AL6G20110 aly name=fgenesh1_pm.C_scaffold_6001598;pid=326378;prot=eq;tid=326378 + scaffold_6 No
AL7G40390 aly name=Al_scaffold_0007_3927;pid=860428;prot=eq;tid=891941 - scaffold_7 No
AT1G18440 ath Peptidyl-tRNA hydrolase family protein; FUNCTIONS IN: aminoacyl-tRNA hydrolase activity; INVOLVED IN: translation; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-tRNA hydrolase, conserved site (InterPro:IPR018171), Peptidyl-tRNA hydrolase (InterPro:IPR001328); BEST Arabidopsis thaliana protein match is: Peptidyl-tRNA hydrolase family protein (TAIR:AT5G16140.2); Has 8043 Blast hits to 8040 proteins in 2597 species: Archae - 0; Bacteria - 5299; Metazoa - 47; Fungi - 102; Plants - 126; Viruses - 0; Other Eukaryotes - 2469 (source: NCBI BLink).;Peptidyl-tRNA hydrolase family protein transcript=eq;prot=eq; + 1 No
AT5G16140 ath Peptidyl-tRNA hydrolase family protein; FUNCTIONS IN: aminoacyl-tRNA hydrolase activity; INVOLVED IN: translation; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-tRNA hydrolase, conserved site (InterPro:IPR018171), Peptidyl-tRNA hydrolase (InterPro:IPR001328); BEST Arabidopsis thaliana protein match is: Peptidyl-tRNA hydrolase family protein (TAIR:AT5G38290.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;Peptidyl-tRNA hydrolase family protein transcript=eq;prot=eq; - 5 No
AT5G19830 ath Peptidyl-tRNA hydrolase family protein; FUNCTIONS IN: aminoacyl-tRNA hydrolase activity; INVOLVED IN: translation; LOCATED IN: mitochondrion; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-tRNA hydrolase, conserved site (InterPro:IPR018171), Peptidyl-tRNA hydrolase (InterPro:IPR001328); BEST Arabidopsis thaliana protein match is: Peptidyl-tRNA hydrolase family protein (TAIR:AT5G16140.2); Has 7915 Blast hits to 7912 proteins in 2585 species: Archae - 0; Bacteria - 5291; Metazoa - 47; Fungi - 78; Plants - 126; Viruses - 0; Other Eukaryotes - 2373 (source: NCBI BLink).;Peptidyl-tRNA hydrolase family protein transcript=eq;prot=eq; + 5 No
AT5G38290 ath Peptidyl-tRNA hydrolase family protein; FUNCTIONS IN: aminoacyl-tRNA hydrolase activity; INVOLVED IN: translation; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidyl-tRNA hydrolase, conserved site (InterPro:IPR018171), Peptidyl-tRNA hydrolase (InterPro:IPR001328); BEST Arabidopsis thaliana protein match is: Peptidyl-tRNA hydrolase family protein (TAIR:AT5G16140.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;Peptidyl-tRNA hydrolase family protein transcript=eq;prot=eq; + 5 No
BD1G62547 bdi pid=Bradi1g62547.1;tid=Bradi1g62547.1;GeneName=Bradi1g62547;transcript=eq;prot=eq - Bd1 No
BD2G02200 bdi aminoacyl-tRNA hydrolase activity (Blast2GO) pid=Bradi2g02200.1;tid=Bradi2g02200.1;GeneName=Bradi2g02200;transcript=eq;prot=eq - Bd2 No
BD2G17630 bdi aminoacyl-tRNA hydrolase activity (Blast2GO) pid=Bradi2g17630.1;tid=Bradi2g17630.1;GeneName=Bradi2g17630;transcript=eq;prot=eq - Bd2 No
BD2G47250 bdi aminoacyl-tRNA hydrolase activity (Blast2GO) pid=Bradi2g47250.1;tid=Bradi2g47250.1;GeneName=Bradi2g47250;transcript=eq;prot=eq - Bd2 No
BD5G25680 bdi aminoacyl-tRNA hydrolase activity (Blast2GO) pid=Bradi5g25680.1;tid=Bradi5g25680.1;GeneName=Bradi5g25680;transcript=eq;prot=eq + Bd5 No
CP00008G00990 cpa name=evm.TU.supercontig_8.99;pid=evm.TU.supercontig_8.99;prot=eq;transcript=eq + supercontig_8 No
CP00013G00210 cpa name=evm.TU.supercontig_13.21;pid=evm.TU.supercontig_13.21;prot=eq;transcript=eq + supercontig_13 No
CP00170G00570 cpa name=evm.TU.supercontig_170.57;pid=evm.TU.supercontig_170.57;prot=eq;transcript=eq + supercontig_170 No
CR02G00720 cre name=kg.chromosome_2_#_155_#_XP_001701641.1;pid=300716;prot=eq;tid=300723;transcript=eq + chromosome_2 No
FV0G33990 fve Chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic, Precursor (similar to) transcript=eq;prot=eq;pid=gene11755 - scf0513146 No
FV3G37320 fve Peptidyl-tRNA hydrolase, mitochondrial, Precursor (putative) transcript=eq;prot=eq;pid=gene24822 - LG3 No
FV5G10550 fve Peptidyl-tRNA hydrolase, chloroplastic, Precursor (similar to) transcript=eq;prot=eq;pid=gene26232 + LG5 No
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