Gene family 
- Id
- HOM001266
- Method
- BLASTP E_value=1e-05 MCL_I=2
- Sequences
- Sub-families
-
ORTHO001443 (38 genes in 20 species)
ORTHO021816 (5 genes in 5 species)
ORTHO022407 (5 genes in 5 species)
View all sub-families (8)
- Keywords
-
Overview of gene family content
- aly
- Arabidopsis lyrata (2 genes)
- ath
- Arabidopsis thaliana (2 genes)
- bdi
- Brachypodium distachyon (16 genes)
- cpa
- Carica papaya (2 genes)
- fve
- Fragaria vesca (1 gene)
- gma
- Glycine max (5 genes)
- lja
- Lotus japonicus (1 gene)
- mdo
- Malus domestica (4 genes)
- mes
- Manihot esculenta (2 genes)
- mtr
- Medicago truncatula (3 genes)
- osa
- Oryza sativa ssp. japonica (9 genes)
- osaindica
- Oryza sativa ssp. indica (7 genes)
- ppa
- Physcomitrella patens (5 genes)
- ptr
- Populus trichocarpa (3 genes)
- rco
- Ricinus communis (2 genes)
- sbi
- Sorghum bicolor (14 genes)
- smo
- Selaginella moellendorffii (1 gene)
- tca
- Theobroma cacao (3 genes)
- vvi
- Vitis vinifera (2 genes)
- zma
- Zea mays (7 genes)
The gene family HOM001266 has 91 genes in 20 species (18 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:
- gene family : HOM001266
Page 1 of 5, showing 20 records out of 91 total, starting on record 1, ending on 20
| gene_id | species | description | comment | strand | chr | outlier |
|---|---|---|---|---|---|---|
| AL3G11390 | aly | name=fgenesh2_kg.3__1143__AT3G10980.1;pid=478442;prot=eq;tid=478442 | + | scaffold_3 | No | |
| AL6G04930 | aly | name=fgenesh2_kg.6__462__AT5G05350.1;pid=487328;prot=eq;tid=487328 | + | scaffold_6 | No | |
| AT3G10980 | ath | PLAC8 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: male gametophyte, cultured cell; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461), Protein of unknown function DUF2985 (InterPro:IPR021369); BEST Arabidopsis thaliana protein match is: PLAC8 family protein (TAIR:AT5G05350.1); Has 166 Blast hits to 162 proteins in 25 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 10; Plants - 150; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).;PLAC8 family protein | transcript=eq;prot=eq; | + | 3 | No |
| AT5G05350 | ath | PLAC8 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461), Protein of unknown function DUF2985 (InterPro:IPR021369); BEST Arabidopsis thaliana protein match is: PLAC8 family protein (TAIR:AT3G10980.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;PLAC8 family protein | transcript=eq;prot=eq; | + | 5 | No |
| BD1G23790 | bdi | pid=Bradi1g23790.1;tid=Bradi1g23790.1;GeneName=Bradi1g23790;transcript=eq;prot=eq | - | Bd1 | Yes | |
| BD1G28240 | bdi | pid=Bradi1g28240.1;tid=Bradi1g28240.1;GeneName=Bradi1g28240;transcript=eq;prot=eq | - | Bd1 | No | |
| BD1G38130 | bdi | pid=Bradi1g38130.1;tid=Bradi1g38130.1;GeneName=Bradi1g38130;transcript=eq;prot=eq | + | Bd1 | No | |
| BD1G64970 | bdi | pid=Bradi1g64970.1;tid=Bradi1g64970.1;GeneName=Bradi1g64970;transcript=eq;prot=eq | + | Bd1 | No | |
| BD1G68790 | bdi | pid=Bradi1g68790.1;tid=Bradi1g68790.1;GeneName=Bradi1g68790;transcript=eq;prot=eq | + | Bd1 | Yes | |
| BD2G05550 | bdi | pid=Bradi2g05550.1;tid=Bradi2g05550.1;GeneName=Bradi2g05550;transcript=eq;prot=eq | - | Bd2 | No | |
| BD2G22430 | bdi | pid=Bradi2g22430.1;tid=Bradi2g22430.1;GeneName=Bradi2g22430;transcript=eq;prot=eq | + | Bd2 | No | |
| BD2G44370 | bdi | pid=Bradi2g44370.1;tid=Bradi2g44370.1;GeneName=Bradi2g44370;transcript=eq;prot=eq | - | Bd2 | Yes | |
| BD2G53740 | bdi | pid=Bradi2g53740.1;tid=Bradi2g53740.1;GeneName=Bradi2g53740;transcript=eq;prot=eq | + | Bd2 | No | |
| BD2G62747 | bdi | pid=Bradi2g62747.1;tid=Bradi2g62747.1;GeneName=Bradi2g62747;transcript=eq;prot=eq | - | Bd2 | No | |
| BD3G15840 | bdi | pid=Bradi3g15840.1;tid=Bradi3g15840.1;GeneName=Bradi3g15840;transcript=eq;prot=eq | + | Bd3 | Yes | |
| BD3G32680 | bdi | ribonuclease H activity (Blast2GO) | pid=Bradi3g32680.1;tid=Bradi3g32680.1;GeneName=Bradi3g32680;transcript=eq;prot=eq | - | Bd3 | Yes |
| BD3G47790 | bdi | pid=Bradi3g47790.1;tid=Bradi3g47790.1;GeneName=Bradi3g47790;transcript=eq;prot=eq | - | Bd3 | Yes | |
| BD4G44700 | bdi | pid=Bradi4g44700.1;tid=Bradi4g44700.1;GeneName=Bradi4g44700;transcript=eq;prot=eq | + | Bd4 | No | |
| BD5G12900 | bdi | pid=Bradi5g12900.1;tid=Bradi5g12900.1;GeneName=Bradi5g12900;transcript=eq;prot=eq | + | Bd5 | Yes | |
| BD5G26630 | bdi | pid=Bradi5g26630.1;tid=Bradi5g26630.1;GeneName=Bradi5g26630;transcript=eq;prot=eq | - | Bd5 | No |