Gene family  

Sub-families
ORTHO001443 (38 genes in 20 species)
ORTHO021816 (5 genes in 5 species)
ORTHO022407 (5 genes in 5 species)
View all sub-families (8)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (16 genes)
cpa
Carica papaya (2 genes)
fve
Fragaria vesca (1 gene)
gma
Glycine max (5 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (4 genes)
mes
Manihot esculenta (2 genes)
mtr
Medicago truncatula (3 genes)
osa
Oryza sativa ssp. japonica (9 genes)
osaindica
Oryza sativa ssp. indica (7 genes)
ppa
Physcomitrella patens (5 genes)
ptr
Populus trichocarpa (3 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (14 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (3 genes)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (7 genes)



The gene family HOM001266 has 91 genes in 20 species (18 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 5, showing 20 records out of 91 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G11390 aly name=fgenesh2_kg.3__1143__AT3G10980.1;pid=478442;prot=eq;tid=478442 + scaffold_3 No
AL6G04930 aly name=fgenesh2_kg.6__462__AT5G05350.1;pid=487328;prot=eq;tid=487328 + scaffold_6 No
AT3G10980 ath PLAC8 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: male gametophyte, cultured cell; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461), Protein of unknown function DUF2985 (InterPro:IPR021369); BEST Arabidopsis thaliana protein match is: PLAC8 family protein (TAIR:AT5G05350.1); Has 166 Blast hits to 162 proteins in 25 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 10; Plants - 150; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).;PLAC8 family protein transcript=eq;prot=eq; + 3 No
AT5G05350 ath PLAC8 family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function Cys-rich (InterPro:IPR006461), Protein of unknown function DUF2985 (InterPro:IPR021369); BEST Arabidopsis thaliana protein match is: PLAC8 family protein (TAIR:AT3G10980.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;PLAC8 family protein transcript=eq;prot=eq; + 5 No
BD1G23790 bdi pid=Bradi1g23790.1;tid=Bradi1g23790.1;GeneName=Bradi1g23790;transcript=eq;prot=eq - Bd1 Yes
BD1G28240 bdi pid=Bradi1g28240.1;tid=Bradi1g28240.1;GeneName=Bradi1g28240;transcript=eq;prot=eq - Bd1 No
BD1G38130 bdi pid=Bradi1g38130.1;tid=Bradi1g38130.1;GeneName=Bradi1g38130;transcript=eq;prot=eq + Bd1 No
BD1G64970 bdi pid=Bradi1g64970.1;tid=Bradi1g64970.1;GeneName=Bradi1g64970;transcript=eq;prot=eq + Bd1 No
BD1G68790 bdi pid=Bradi1g68790.1;tid=Bradi1g68790.1;GeneName=Bradi1g68790;transcript=eq;prot=eq + Bd1 Yes
BD2G05550 bdi pid=Bradi2g05550.1;tid=Bradi2g05550.1;GeneName=Bradi2g05550;transcript=eq;prot=eq - Bd2 No
BD2G22430 bdi pid=Bradi2g22430.1;tid=Bradi2g22430.1;GeneName=Bradi2g22430;transcript=eq;prot=eq + Bd2 No
BD2G44370 bdi pid=Bradi2g44370.1;tid=Bradi2g44370.1;GeneName=Bradi2g44370;transcript=eq;prot=eq - Bd2 Yes
BD2G53740 bdi pid=Bradi2g53740.1;tid=Bradi2g53740.1;GeneName=Bradi2g53740;transcript=eq;prot=eq + Bd2 No
BD2G62747 bdi pid=Bradi2g62747.1;tid=Bradi2g62747.1;GeneName=Bradi2g62747;transcript=eq;prot=eq - Bd2 No
BD3G15840 bdi pid=Bradi3g15840.1;tid=Bradi3g15840.1;GeneName=Bradi3g15840;transcript=eq;prot=eq + Bd3 Yes
BD3G32680 bdi ribonuclease H activity (Blast2GO) pid=Bradi3g32680.1;tid=Bradi3g32680.1;GeneName=Bradi3g32680;transcript=eq;prot=eq - Bd3 Yes
BD3G47790 bdi pid=Bradi3g47790.1;tid=Bradi3g47790.1;GeneName=Bradi3g47790;transcript=eq;prot=eq - Bd3 Yes
BD4G44700 bdi pid=Bradi4g44700.1;tid=Bradi4g44700.1;GeneName=Bradi4g44700;transcript=eq;prot=eq + Bd4 No
BD5G12900 bdi pid=Bradi5g12900.1;tid=Bradi5g12900.1;GeneName=Bradi5g12900;transcript=eq;prot=eq + Bd5 Yes
BD5G26630 bdi pid=Bradi5g26630.1;tid=Bradi5g26630.1;GeneName=Bradi5g26630;transcript=eq;prot=eq - Bd5 No
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