Gene family  

Sub-families
ORTHO002630 (31 genes in 21 species)
ORTHO007903 (22 genes in 18 species)
ORTHO036933 (3 genes in 2 species)
View all sub-families (5)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (3 genes)
cpa
Carica papaya (7 genes)
fve
Fragaria vesca (3 genes)
gma
Glycine max (8 genes)
lja
Lotus japonicus (4 genes)
mdo
Malus domestica (11 genes)
mes
Manihot esculenta (5 genes)
mrcc299
Micromonas sp. RCC299 (2 genes)
mtr
Medicago truncatula (5 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (4 genes)
osaindica
Oryza sativa ssp. indica (3 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (5 genes)
ptr
Populus trichocarpa (4 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (3 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (3 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (3 genes)
zma
Zea mays (5 genes)



The gene family HOM001264 has 91 genes in 24 species (2 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 5, showing 20 records out of 91 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G22940 aly name=fgenesh2_kg.1__2364__AT1G21700.1;pid=472410;prot=eq;tid=472410 - scaffold_1 No
AL4G18850 aly name=scaffold_401936.1;pid=902435;prot=eq;tid=933948 + scaffold_4 No
AL4G35830 aly name=scaffold_403739.1;pid=904238;prot=eq;tid=935751 + scaffold_4 No
AT1G21700 ath a member of the Arabidopsis SWI3 gene family. Protein physically interacts with ATSWI3B and ATSWI3A, the other two members of the SWI3 family. Homologous to yeast SWI3 & RSC8, components of the SWI/SNF and RSC chromatin remodeling complexes. Referred to as CHB3 in Zhou et al (2003).;SWITCH/sucrose nonfermenting 3C transcript=eq;prot=eq; - 1 No
AT2G33610 ath Homologous to yeast SWI3 & RSC8, components of the SWI/SNF and RSC chromatin remodeling complexes. Interacts with BSH, AtSWI3A, SWI3C and FCA. Expressed ubiquitously.;switch subunit 3 transcript=eq;prot=eq; + 2 No
AT2G47620 ath Homologous to yeast SWI3 and a member of the Arabidopsis SWI3 gene family. Protein physically interacts with ATSWI3B and ATSWI3C, the other two members of the SWI3 family.;SWITCH/sucrose nonfermenting 3A transcript=eq;prot=eq; + 2 No
BD3G06870 bdi MYB-related transcription factor pid=Bradi3g06870.1;tid=Bradi3g06870.1;GeneName=Bradi3g06870;Name=BdMYBR42;transcript=eq;prot=eq + Bd3 No
BD4G41230 bdi MYB-related transcription factor pid=Bradi4g41230.1;tid=Bradi4g41230.1;GeneName=Bradi4g41230;Name=BdMYBR66;transcript=eq;prot=eq - Bd4 No
BD5G13510 bdi MYB-related transcription factor pid=Bradi5g13510.1;tid=Bradi5g13510.1;GeneName=Bradi5g13510;Name=BdMYBR67;transcript=eq;prot=eq + Bd5 No
CP00004G01500 cpa name=evm.TU.supercontig_4.150;pid=evm.TU.supercontig_4.150;prot=eq;transcript=eq + supercontig_4 No
CP00004G01510 cpa name=evm.TU.supercontig_4.151;pid=evm.TU.supercontig_4.151;prot=eq;transcript=eq + supercontig_4 No
CP00026G00130 cpa name=evm.TU.supercontig_26.13;pid=evm.TU.supercontig_26.13;prot=eq;transcript=eq + supercontig_26 No
CP00064G01200 cpa name=evm.TU.supercontig_64.120;pid=evm.TU.supercontig_64.120;prot=eq;transcript=eq + supercontig_64 No
CP00064G01220 cpa name=evm.TU.supercontig_64.122;pid=evm.TU.supercontig_64.122;prot=eq;transcript=eq + supercontig_64 No
CP00064G01230 cpa name=evm.TU.supercontig_64.123;pid=evm.TU.supercontig_64.123;prot=eq;transcript=eq + supercontig_64 No
CP40216G00010 cpa name=evm.TU.contig_40216.1;pid=evm.TU.contig_40216.1;prot=eq;transcript=eq + contig_40216 No
FV0G09610 fve SWI/SNF complex subunit SWI3A (AtSWI3A) (probable) transcript=eq;prot=eq;pid=gene06487 + scf0513158 No
FV2G29950 fve SWI/SNF complex subunit SWI3C (AtSWI3C) (putative) transcript=eq;prot=eq;pid=gene11231 + LG2 No
FV3G00790 fve SWI/SNF complex subunit SWI3B (AtSWI3B) (similar to) transcript=eq;prot=eq;pid=gene19598 - LG3 No
GM04G01600 gma 04 pid=16254486;transcript=eq;prot=eq;name=Glyma04g01600.1 + Gm04 No
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