Gene family  

Sub-families
ORTHO004754 (27 genes in 2 species)
ORTHO007416 (23 genes in 18 species)
ORTHO014894 (11 genes in 1 species)
View all sub-families (9)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (1 gene)
cpa
Carica papaya (20 genes)
fve
Fragaria vesca (1 gene)
gma
Glycine max (32 genes)
lja
Lotus japonicus (6 genes)
mdo
Malus domestica (8 genes)
mes
Manihot esculenta (3 genes)
mtr
Medicago truncatula (2 genes)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (2 genes)
ptr
Populus trichocarpa (3 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (1 gene)
tca
Theobroma cacao (2 genes)
vvi
Vitis vinifera (1 gene)
zma
Zea mays (2 genes)



The gene family HOM001253 has 92 genes in 18 species (7 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 5, showing 20 records out of 92 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G41810 aly name=fgenesh2_kg.3__3624__AT2G20825.1;pid=480923;prot=eq;tid=480923 - scaffold_3 No
AL7G13650 aly name=fgenesh2_kg.7__1389__AT4G28190.1;pid=491956;prot=eq;tid=491956 - scaffold_7 No
AT2G20825 ath ULTRAPETALA 2 (ULT2); FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Developmental regulator, ULTRAPETALA (InterPro:IPR020533), SAND domain (InterPro:IPR000770); BEST Arabidopsis thaliana protein match is: Developmental regulator, ULTRAPETALA (TAIR:AT4G28190.1); Has 46 Blast hits to 46 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;Developmental regulator, ULTRAPETALA transcript=eq;prot=eq; - 2 No
AT4G28190 ath Encodes a novel Cys-rich protein with a B-box like domain that acts as a negative regulator of meristem cell accumulation in inflorescence and floral meristems as loss-of-function ult1 mutations cause inflorescence meristem enlargement, the production of extra flowers and floral organs, and a decrease in floral meristem determinacy. Acts opposite to CLF which represses AG, but preventing deposition of CLF repressive methylation marks.;Developmental regulator, ULTRAPETALA transcript=eq;prot=eq; + 4 No
BD2G51790 bdi pid=Bradi2g51790.1;tid=Bradi2g51790.1;GeneName=Bradi2g51790;transcript=eq;prot=eq - Bd2 No
CP00000G01530 cpa name=evm.TU.supercontig_0.153;pid=evm.TU.supercontig_0.153;prot=eq;transcript=eq - supercontig_0 No
CP00034G01070 cpa name=evm.TU.supercontig_34.107;pid=evm.TU.supercontig_34.107;prot=eq;transcript=eq + supercontig_34 No
CP00080G01050 cpa name=evm.TU.supercontig_80.105;pid=evm.TU.supercontig_80.105;prot=eq;transcript=eq - supercontig_80 No
CP00080G01060 cpa name=evm.TU.supercontig_80.106;pid=evm.TU.supercontig_80.106;prot=eq;transcript=eq - supercontig_80 No
CP00121G00070 cpa name=evm.TU.supercontig_121.7;pid=evm.TU.supercontig_121.7;prot=eq;transcript=eq - supercontig_121 No
CP00121G00150 cpa name=evm.TU.supercontig_121.15;pid=evm.TU.supercontig_121.15;prot=eq;transcript=eq - supercontig_121 No
CP00251G00020 cpa name=evm.TU.supercontig_251.2;pid=evm.TU.supercontig_251.2;prot=eq;transcript=eq + supercontig_251 No
CP00280G00010 cpa name=evm.TU.supercontig_280.1;pid=evm.TU.supercontig_280.1;prot=eq;transcript=eq + supercontig_280 No
CP00772G00010 cpa name=evm.TU.supercontig_772.1;pid=evm.TU.supercontig_772.1;prot=eq;transcript=eq - supercontig_772 Yes
CP00986G00010 cpa name=evm.TU.supercontig_986.1;pid=evm.TU.supercontig_986.1;prot=eq;transcript=eq + supercontig_986 Yes
CP01630G00010 cpa name=evm.TU.supercontig_1630.1;pid=evm.TU.supercontig_1630.1;prot=eq;transcript=eq + supercontig_1630 No
CP02483G00010 cpa name=evm.TU.supercontig_2483.1;pid=evm.TU.supercontig_2483.1;prot=eq;transcript=eq + supercontig_2483 Yes
CP02812G00010 cpa name=evm.TU.supercontig_2812.1;pid=evm.TU.supercontig_2812.1;prot=eq;transcript=eq + supercontig_2812 Yes
CP29435G00010 cpa name=evm.TU.contig_29435.1;pid=evm.TU.contig_29435.1;prot=eq;transcript=eq - contig_29435 No
CP31099G00010 cpa name=evm.TU.contig_31099.1;pid=evm.TU.contig_31099.1;prot=eq;transcript=eq - contig_31099 No
<< previous
1 | 2 | 3 | 4 | 5 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier