Gene family  

Sub-families
ORTHO005685 (25 genes in 21 species)
ORTHO008542 (21 genes in 17 species)
ORTHO013286 (14 genes in 13 species)
View all sub-families (6)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (3 genes)
cpa
Carica papaya (7 genes)
fve
Fragaria vesca (5 genes)
gma
Glycine max (8 genes)
lja
Lotus japonicus (8 genes)
mdo
Malus domestica (8 genes)
mes
Manihot esculenta (5 genes)
mtr
Medicago truncatula (1 gene)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (1 gene)
osaindica
Oryza sativa ssp. indica (4 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (8 genes)
rco
Ricinus communis (4 genes)
sbi
Sorghum bicolor (4 genes)
smo
Selaginella moellendorffii (4 genes)
tca
Theobroma cacao (4 genes)
vvi
Vitis vinifera (4 genes)
zma
Zea mays (5 genes)



The gene family HOM001240 has 93 genes in 22 species (2 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 5, showing 20 records out of 93 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G16050 aly name=fgenesh1_pg.C_scaffold_1001378;pid=334813;prot=eq;tid=334813 + scaffold_1 No
AL3G15880 aly name=fgenesh2_kg.3__1639__AT3G15090.1;pid=478938;prot=eq;tid=478938 + scaffold_3 No
AL3G19910 aly name=fgenesh2_kg.3__2039__AT3G18380.2;pid=479338;prot=eq;tid=479338 - scaffold_3 No
AT1G15215 ath BEST Arabidopsis thaliana protein match is: sequence-specific DNA binding transcription factors;sequence-specific DNA binding (TAIR:AT3G18380.1); Has 89 Blast hits to 86 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 89; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). transcript=eq;prot=eq; + 1 No
AT3G15090 ath GroES-like zinc-binding alcohol dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, zinc ion binding; INVOLVED IN: oxidation reduction; LOCATED IN: mitochondrion; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), Alcohol dehydrogenase GroES-like (InterPro:IPR013154), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: Oxidoreductase, zinc-binding dehydrogenase family protein (TAIR:AT1G23740.1); Has 32555 Blast hits to 32407 proteins in 2523 species: Archae - 489; Bacteria - 20756; Metazoa - 1208; Fungi - 3376; Plants - 855; Viruses - 0; Other Eukaryotes - 5871 (source: NCBI BLink).;GroES-like zinc-binding alcohol dehydrogenase family protein transcript=eq;prot=eq; + 3 No
AT3G18380 ath sequence-specific DNA binding transcription factors;sequence-specific DNA binding; FUNCTIONS IN: sequence-specific DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15215.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;sequence-specific DNA binding transcription factors;sequence-specific DNA binding transcript=eq;prot=eq; - 3 No
BD1G42040 bdi pid=Bradi1g42040.1;tid=Bradi1g42040.1;GeneName=Bradi1g42040;transcript=eq;prot=eq - Bd1 No
BD2G50080 bdi zinc ion binding (Blast2GO) pid=Bradi2g50080.1;tid=Bradi2g50080.1;GeneName=Bradi2g50080;transcript=eq;prot=eq + Bd2 No
BD4G28440 bdi pid=Bradi4g28440.3;tid=Bradi4g28440.3;GeneName=Bradi4g28440;transcript=eq;prot=eq - Bd4 No
CP00007G02040 cpa name=evm.TU.supercontig_7.204;pid=evm.TU.supercontig_7.204;prot=eq;transcript=eq - supercontig_7 No
CP00080G00130 cpa name=evm.TU.supercontig_80.13;pid=evm.TU.supercontig_80.13;prot=eq;transcript=eq - supercontig_80 No
CP00080G00140 cpa name=evm.TU.supercontig_80.14;pid=evm.TU.supercontig_80.14;prot=eq;transcript=eq - supercontig_80 No
CP00080G00150 cpa name=evm.TU.supercontig_80.15;pid=evm.TU.supercontig_80.15;prot=eq;transcript=eq - supercontig_80 No
CP00080G00160 cpa name=evm.TU.supercontig_80.16;pid=evm.TU.supercontig_80.16;prot=eq;transcript=eq - supercontig_80 No
CP00109G00080 cpa name=evm.TU.supercontig_109.8;pid=evm.TU.supercontig_109.8;prot=eq;transcript=eq + supercontig_109 No
CP46715G00010 cpa name=evm.TU.contig_46715.1;pid=evm.TU.contig_46715.1;prot=eq;transcript=eq - contig_46715 No
FV2G34840 fve Chromo domain-containing protein T09A5.8 (probable) transcript=eq;prot=eq;pid=gene09002 + LG2 No
FV3G17850 fve WUSCHEL-related homeobox 8 (probable) transcript=eq;prot=eq;pid=gene27205 - LG3 No
FV3G17860 fve Reticulon-4-interacting protein 1, mitochondrial, Precursor (probable) transcript=eq;prot=eq;pid=gene27206 + LG3 No
FV3G42300 fve Serine/threonine-protein kinase PAK 4 (PAK-4) (probable) transcript=eq;prot=eq;pid=gene20595 - LG3 Yes
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