Gene family  

Sub-families
ORTHO001899 (35 genes in 19 species)
ORTHO011459 (17 genes in 12 species)
ORTHO014879 (11 genes in 9 species)
View all sub-families (8)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (9 genes)
cpa
Carica papaya (3 genes)
fve
Fragaria vesca (3 genes)
gma
Glycine max (10 genes)
lja
Lotus japonicus (3 genes)
mdo
Malus domestica (10 genes)
mes
Manihot esculenta (6 genes)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (5 genes)
osaindica
Oryza sativa ssp. indica (7 genes)
ppa
Physcomitrella patens (3 genes)
ptr
Populus trichocarpa (5 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (4 genes)
smo
Selaginella moellendorffii (4 genes)
tca
Theobroma cacao (3 genes)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (6 genes)



The gene family HOM001239 has 93 genes in 20 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 5, showing 20 records out of 93 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL6G24980 aly name=scaffold_602590.1;pid=910533;prot=eq;tid=942046 + scaffold_6 No
AL7G10210 aly name=fgenesh2_kg.7__1037__AT4G31380.1;pid=491604;prot=eq;tid=491604 - scaffold_7 No
AL8G12250 aly name=scaffold_801238.1;pid=917838;prot=eq;tid=949351 - scaffold_8 No
AT4G31380 ath encodes a small protein with unknown function and is similar to flower promoting factor 1. This gene is not expressed in apical meristem after floral induction but is expressed in roots, flowers, and in low abundance, leaves.;FPF1-like protein 1 transcript=eq;prot=eq; + 4 No
AT5G10625 ath BEST Arabidopsis thaliana protein match is: flowering promoting factor 1 (TAIR:AT5G24860.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). transcript=eq;prot=eq; + 5 No
AT5G24860 ath encodes a small protein of 12.6 kDa that regulates flowering and is involved in gibberellin signalling pathway. It is expressed in apical meristems immediately after the photoperiodic induction of flowering. Genetic interactions with flowering time and floral organ identity genes suggest that this gene may be involved in modulating the competence to flower. There are two other genes similar to FPF1, FLP1 (At4g31380) and FLP2 (no locus name yet, on BAC F8F16 on chr 4). This is so far a plant-specific gene and is only found in long-day mustard, arabidopsis, and rice.;flowering promoting factor 1 transcript=eq;prot=eq; + 5 No
BD1G18240 bdi pid=Bradi1g18240.1;tid=Bradi1g18240.1;GeneName=Bradi1g18240;transcript=eq;prot=eq - Bd1 No
BD1G62655 bdi pid=Bradi1g62655.1;tid=Bradi1g62655.1;GeneName=Bradi1g62655;transcript=eq;prot=eq - Bd1 No
BD2G09310 bdi pid=Bradi2g09310.1;tid=Bradi2g09310.1;GeneName=Bradi2g09310;transcript=eq;prot=eq - Bd2 No
BD2G09320 bdi pid=Bradi2g09320.1;tid=Bradi2g09320.1;GeneName=Bradi2g09320;transcript=eq;prot=eq - Bd2 No
BD2G59820 bdi pid=Bradi2g59820.1;tid=Bradi2g59820.1;GeneName=Bradi2g59820;transcript=eq;prot=eq - Bd2 No
BD2G59830 bdi pid=Bradi2g59830.1;tid=Bradi2g59830.1;GeneName=Bradi2g59830;transcript=eq;prot=eq - Bd2 No
BD3G12450 bdi pid=Bradi3g12450.1;tid=Bradi3g12450.1;GeneName=Bradi3g12450;transcript=eq;prot=eq + Bd3 No
BD3G21410 bdi pid=Bradi3g21410.1;tid=Bradi3g21410.1;GeneName=Bradi3g21410;transcript=eq;prot=eq + Bd3 No
BD5G04810 bdi pid=Bradi5g04810.1;tid=Bradi5g04810.1;GeneName=Bradi5g04810;transcript=eq;prot=eq - Bd5 No
CP00081G01410 cpa name=evm.TU.supercontig_81.141;pid=evm.TU.supercontig_81.141;prot=eq;transcript=eq + supercontig_81 No
CP01312G00010 cpa name=evm.TU.supercontig_1312.1;pid=evm.TU.supercontig_1312.1;prot=eq;transcript=eq + supercontig_1312 No
CP47211G00010 cpa name=evm.TU.contig_47211.1;pid=evm.TU.contig_47211.1;prot=eq;transcript=eq - contig_47211 No
FV0G30670 fve Putative protein TPRXL (probable) transcript=eq;prot=eq;pid=gene14076 + scf0513178 No
FV4G12740 fve Maturase K (probable) transcript=eq;prot=eq;pid=gene06874 + LG4 No
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