Gene family  

Sub-families
ORTHO000895 (45 genes in 22 species)
ORTHO007334 (23 genes in 18 species)
ORTHO055403 (2 genes in 1 species)
View all sub-families (4)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (4 genes)
cpa
Carica papaya (4 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (7 genes)
gma
Glycine max (8 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (9 genes)
mes
Manihot esculenta (5 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (2 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (4 genes)
osaindica
Oryza sativa ssp. indica (3 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (6 genes)
ptr
Populus trichocarpa (6 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (2 genes)
tca
Theobroma cacao (6 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (4 genes)
zma
Zea mays (7 genes)



The gene family HOM001235 has 93 genes in 24 species (5 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 5, showing 20 records out of 93 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL4G22090 aly name=fgenesh2_kg.4__1700__AT2G36620.1;pid=482640;prot=eq;tid=482640 - scaffold_4 No
AL5G22950 aly name=fgenesh2_kg.5__1669__AT3G53020.1;pid=485677;prot=eq;tid=485677 - scaffold_5 No
AL6G17720 aly name=Al_scaffold_0006_1692;pid=862183;prot=eq;tid=893696 - scaffold_6 No
AT2G36620 ath RPL24A encodes ribosomal protein L24, homolog of cytosolic RPL24, found in archaea and higher eukaryotes. Arabidopsis has two RPL24 homologs, RPL24A (AT2G36620) and RPL24B (AT3G53020).;ribosomal protein L24 transcript=eq;prot=eq; - 2 No
AT3G53020 ath RPL24B encodes ribosomal protein L24, homolog of cytosolic RPL24, found in archaea and higher eukaryotes. Arabidopsis has two RPL24 homologs, RPL24A (AT2G36620) and RPL24B. Mutants showed defects in apical-basal gynoecium patterning similar to previously described ett and mp mutants. Transformation of stv1-1 mutant with a uORF-eliminated ETT construct partially suppressed the stv1 gynoecium phenotype, implying that STV1 could influence ETT translation through its uORFs. Regulated by TCP20.;Ribosomal protein L24e family protein transcript=eq;prot=eq; - 3 No
AT5G17790 ath Encodes a 85.9 kDa protein containing novel repeats and zinc fingers described as protein interaction domains. VAR3 is a part of a protein complex required for normal chloroplast and palisade cell development. Mutants display a variegated phenotype due to somatic areas lacking or containing developmentally retarded chloroplasts and greatly reduced numbers of palisade cells.;zinc finger (Ran-binding) family protein transcript=eq;prot=eq; - 5 No
BD1G04160 bdi pid=Bradi1g04160.1;tid=Bradi1g04160.1;GeneName=Bradi1g04160;transcript=eq;prot=eq - Bd1 No
BD2G53210 bdi zinc ion binding (Blast2GO) pid=Bradi2g53210.1;tid=Bradi2g53210.1;GeneName=Bradi2g53210;transcript=eq;prot=eq + Bd2 No
BD2G53220 bdi pid=Bradi2g53220.3;tid=Bradi2g53220.3;GeneName=Bradi2g53220;transcript=eq;prot=eq + Bd2 No
BD3G38917 bdi pid=Bradi3g38917.1;tid=Bradi3g38917.1;GeneName=Bradi3g38917;transcript=eq;prot=eq - Bd3 No
CP00005G01030 cpa name=evm.TU.supercontig_5.103;pid=evm.TU.supercontig_5.103;prot=eq;transcript=eq - supercontig_5 No
CP00030G00300 cpa name=evm.TU.supercontig_30.30;pid=evm.TU.supercontig_30.30;prot=eq;transcript=eq - supercontig_30 No
CP00073G00050 cpa name=evm.TU.supercontig_73.5;pid=evm.TU.supercontig_73.5;prot=eq;transcript=eq + supercontig_73 No
CP00841G00010 cpa name=evm.TU.supercontig_841.1;pid=evm.TU.supercontig_841.1;prot=eq;transcript=eq - supercontig_841 No
CR02G11500 cre name=MAY_171150;pid=195608;prot=eq;tid=195608;transcript=eq + chromosome_2 No
FV2G01220 fve 60S ribosomal protein L24 (similar to) transcript=eq;prot=eq;pid=gene21867 - LG2 No
FV5G02010 fve 60S ribosomal protein L24 (similar to) transcript=eq;prot=eq;pid=gene32409 - LG5 No
FV5G37780 fve hypothetical protein transcript=eq;prot=eq;pid=gene29511 - LG5 Yes
FV6G19650 fve 60S ribosomal protein L24 (similar to) transcript=eq;prot=eq;pid=gene30096 - LG6 No
FV6G24830 fve 60S ribosomal protein L24 (similar to) transcript=eq;prot=eq;pid=gene15930 + LG6 No
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