Gene family 
- Id
- HOM001235
- Method
- BLASTP E_value=1e-05 MCL_I=2
- Sequences
- Sub-families
-
ORTHO000895 (45 genes in 22 species)
ORTHO007334 (23 genes in 18 species)
ORTHO055403 (2 genes in 1 species)
View all sub-families (4)
- Keywords
-
Overview of gene family content
- aly
- Arabidopsis lyrata (3 genes)
- ath
- Arabidopsis thaliana (3 genes)
- bdi
- Brachypodium distachyon (4 genes)
- cpa
- Carica papaya (4 genes)
- cre
- Chlamydomonas reinhardtii (1 gene)
- fve
- Fragaria vesca (7 genes)
- gma
- Glycine max (8 genes)
- lja
- Lotus japonicus (2 genes)
- mdo
- Malus domestica (9 genes)
- mes
- Manihot esculenta (5 genes)
- mrcc299
- Micromonas sp. RCC299 (1 gene)
- mtr
- Medicago truncatula (2 genes)
- olu
- Ostreococcus lucimarinus (1 gene)
- osa
- Oryza sativa ssp. japonica (4 genes)
- osaindica
- Oryza sativa ssp. indica (3 genes)
- ota
- Ostreococcus tauri (1 gene)
- ppa
- Physcomitrella patens (6 genes)
- ptr
- Populus trichocarpa (6 genes)
- rco
- Ricinus communis (3 genes)
- sbi
- Sorghum bicolor (2 genes)
- tca
- Theobroma cacao (6 genes)
- vca
- Volvox carteri (1 gene)
- vvi
- Vitis vinifera (4 genes)
- zma
- Zea mays (7 genes)
The gene family HOM001235 has 93 genes in 24 species (5 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:
- gene family : HOM001235
Page 1 of 5, showing 20 records out of 93 total, starting on record 1, ending on 20
| gene_id | species | description | comment | strand | chr | outlier |
|---|---|---|---|---|---|---|
| AL4G22090 | aly | name=fgenesh2_kg.4__1700__AT2G36620.1;pid=482640;prot=eq;tid=482640 | - | scaffold_4 | No | |
| AL5G22950 | aly | name=fgenesh2_kg.5__1669__AT3G53020.1;pid=485677;prot=eq;tid=485677 | - | scaffold_5 | No | |
| AL6G17720 | aly | name=Al_scaffold_0006_1692;pid=862183;prot=eq;tid=893696 | - | scaffold_6 | No | |
| AT2G36620 | ath | RPL24A encodes ribosomal protein L24, homolog of cytosolic RPL24, found in archaea and higher eukaryotes. Arabidopsis has two RPL24 homologs, RPL24A (AT2G36620) and RPL24B (AT3G53020).;ribosomal protein L24 | transcript=eq;prot=eq; | - | 2 | No |
| AT3G53020 | ath | RPL24B encodes ribosomal protein L24, homolog of cytosolic RPL24, found in archaea and higher eukaryotes. Arabidopsis has two RPL24 homologs, RPL24A (AT2G36620) and RPL24B. Mutants showed defects in apical-basal gynoecium patterning similar to previously described ett and mp mutants. Transformation of stv1-1 mutant with a uORF-eliminated ETT construct partially suppressed the stv1 gynoecium phenotype, implying that STV1 could influence ETT translation through its uORFs. Regulated by TCP20.;Ribosomal protein L24e family protein | transcript=eq;prot=eq; | - | 3 | No |
| AT5G17790 | ath | Encodes a 85.9 kDa protein containing novel repeats and zinc fingers described as protein interaction domains. VAR3 is a part of a protein complex required for normal chloroplast and palisade cell development. Mutants display a variegated phenotype due to somatic areas lacking or containing developmentally retarded chloroplasts and greatly reduced numbers of palisade cells.;zinc finger (Ran-binding) family protein | transcript=eq;prot=eq; | - | 5 | No |
| BD1G04160 | bdi | pid=Bradi1g04160.1;tid=Bradi1g04160.1;GeneName=Bradi1g04160;transcript=eq;prot=eq | - | Bd1 | No | |
| BD2G53210 | bdi | zinc ion binding (Blast2GO) | pid=Bradi2g53210.1;tid=Bradi2g53210.1;GeneName=Bradi2g53210;transcript=eq;prot=eq | + | Bd2 | No |
| BD2G53220 | bdi | pid=Bradi2g53220.3;tid=Bradi2g53220.3;GeneName=Bradi2g53220;transcript=eq;prot=eq | + | Bd2 | No | |
| BD3G38917 | bdi | pid=Bradi3g38917.1;tid=Bradi3g38917.1;GeneName=Bradi3g38917;transcript=eq;prot=eq | - | Bd3 | No | |
| CP00005G01030 | cpa | name=evm.TU.supercontig_5.103;pid=evm.TU.supercontig_5.103;prot=eq;transcript=eq | - | supercontig_5 | No | |
| CP00030G00300 | cpa | name=evm.TU.supercontig_30.30;pid=evm.TU.supercontig_30.30;prot=eq;transcript=eq | - | supercontig_30 | No | |
| CP00073G00050 | cpa | name=evm.TU.supercontig_73.5;pid=evm.TU.supercontig_73.5;prot=eq;transcript=eq | + | supercontig_73 | No | |
| CP00841G00010 | cpa | name=evm.TU.supercontig_841.1;pid=evm.TU.supercontig_841.1;prot=eq;transcript=eq | - | supercontig_841 | No | |
| CR02G11500 | cre | name=MAY_171150;pid=195608;prot=eq;tid=195608;transcript=eq | + | chromosome_2 | No | |
| FV2G01220 | fve | 60S ribosomal protein L24 (similar to) | transcript=eq;prot=eq;pid=gene21867 | - | LG2 | No |
| FV5G02010 | fve | 60S ribosomal protein L24 (similar to) | transcript=eq;prot=eq;pid=gene32409 | - | LG5 | No |
| FV5G37780 | fve | hypothetical protein | transcript=eq;prot=eq;pid=gene29511 | - | LG5 | Yes |
| FV6G19650 | fve | 60S ribosomal protein L24 (similar to) | transcript=eq;prot=eq;pid=gene30096 | - | LG6 | No |
| FV6G24830 | fve | 60S ribosomal protein L24 (similar to) | transcript=eq;prot=eq;pid=gene15930 | + | LG6 | No |