Gene family  

Sub-families
ORTHO002426 (32 genes in 25 species)
ORTHO005165 (26 genes in 19 species)
ORTHO007758 (22 genes in 16 species)
View all sub-families (5)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (3 genes)
cpa
Carica papaya (3 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (3 genes)
gma
Glycine max (6 genes)
lja
Lotus japonicus (3 genes)
mdo
Malus domestica (9 genes)
mes
Manihot esculenta (4 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (2 genes)
olu
Ostreococcus lucimarinus (2 genes)
osa
Oryza sativa ssp. japonica (3 genes)
osaindica
Oryza sativa ssp. indica (3 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (6 genes)
ptr
Populus trichocarpa (4 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (4 genes)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (3 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (12 genes)
zma
Zea mays (8 genes)



The gene family HOM001234 has 93 genes in 25 species (4 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 5, showing 20 records out of 93 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL2G23590 aly name=fgenesh2_kg.2__1740__AT1G74730.1;pid=476610;prot=eq;tid=476610 + scaffold_2 No
AL3G06350 aly name=fgenesh2_kg.3__629__AT3G06290.1;pid=477928;prot=eq;tid=477928 - scaffold_3 No
AL5G24440 aly name=fgenesh2_kg.5__1830__AT3G54380.1;pid=485838;prot=eq;tid=485838 - scaffold_5 No
AT1G74730 ath Protein of unknown function (DUF1118); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1118 (InterPro:IPR009500); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1118) (TAIR:AT5G08050.1); Has 78 Blast hits to 78 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).;Protein of unknown function (DUF1118) transcript=eq;prot=eq; + 1 No
AT3G06290 ath SAC3/GANP/Nin1/mts3/eIF-3 p25 family; CONTAINS InterPro DOMAIN/s: SAC3/GANP/Nin1/mts3/eIF-3 p25 (InterPro:IPR005062); BEST Arabidopsis thaliana protein match is: SAC3/GANP/Nin1/mts3/eIF-3 p25 family (TAIR:AT3G54380.1); Has 1557 Blast hits to 1047 proteins in 222 species: Archae - 0; Bacteria - 35; Metazoa - 487; Fungi - 321; Plants - 148; Viruses - 0; Other Eukaryotes - 566 (source: NCBI BLink).;SAC3/GANP/Nin1/mts3/eIF-3 p25 family transcript=eq;prot=eq; - 3 No
AT3G54380 ath SAC3/GANP/Nin1/mts3/eIF-3 p25 family; CONTAINS InterPro DOMAIN/s: SAC3/GANP/Nin1/mts3/eIF-3 p25 (InterPro:IPR005062); BEST Arabidopsis thaliana protein match is: SAC3/GANP/Nin1/mts3/eIF-3 p25 family (TAIR:AT3G06290.1); Has 539 Blast hits to 535 proteins in 177 species: Archae - 0; Bacteria - 0; Metazoa - 197; Fungi - 200; Plants - 96; Viruses - 0; Other Eukaryotes - 46 (source: NCBI BLink).;SAC3/GANP/Nin1/mts3/eIF-3 p25 family transcript=eq;prot=eq; - 3 No
BD1G19627 bdi pid=Bradi1g19627.1;tid=Bradi1g19627.1;GeneName=Bradi1g19627;transcript=eq;prot=eq - Bd1 No
BD1G62340 bdi pid=Bradi1g62340.1;tid=Bradi1g62340.1;GeneName=Bradi1g62340;transcript=eq;prot=eq - Bd1 No
BD2G42040 bdi pid=Bradi2g42040.1;tid=Bradi2g42040.1;GeneName=Bradi2g42040;transcript=eq;prot=eq - Bd2 No
CP00016G00700 cpa name=evm.TU.supercontig_16.70;pid=evm.TU.supercontig_16.70;prot=eq;transcript=eq - supercontig_16 No
CP00017G01820 cpa name=evm.TU.supercontig_17.182;pid=evm.TU.supercontig_17.182;prot=eq;transcript=eq - supercontig_17 No
CP00033G01360 cpa name=evm.TU.supercontig_33.136;pid=evm.TU.supercontig_33.136;prot=eq;transcript=eq - supercontig_33 No
CR02G15140 cre name=pasa_Sanger_mRNA19726;pid=416235;prot=eq;tid=410106;transcript=eq + chromosome_2 No
FV4G16330 fve 80 kDa MCM3-associated protein (probable) transcript=eq;prot=eq;pid=gene06052 - LG4 No
FV5G13950 fve RAS protein activator like-3 (probable) transcript=eq;prot=eq;pid=gene25944 + LG5 No
FV7G01070 fve SAC3 family protein 1 (probable) transcript=eq;prot=eq;pid=gene00260 + LG7 No
GM04G34330 gma 04 pid=16256727;transcript=eq;prot=eq;name=Glyma04g34330.1 + Gm04 No
GM06G20240 gma 06 pid=16263593;transcript=eq;prot=eq;name=Glyma06g20240.1 - Gm06 No
GM13G25740 gma 13 pid=16291564;transcript=eq;prot=eq;name=Glyma13g25740.1 - Gm13 No
GM13G28300 gma 13 pid=16291857;transcript=eq;prot=eq;name=Glyma13g28300.1 - Gm13 No
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