Gene family  

Sub-families
ORTHO006718 (24 genes in 19 species)
ORTHO009062 (21 genes in 5 species)
ORTHO018711 (7 genes in 1 species)
View all sub-families (12)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (6 genes)
ath
Arabidopsis thaliana (4 genes)
bdi
Brachypodium distachyon (3 genes)
cpa
Carica papaya (5 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (4 genes)
gma
Glycine max (21 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (4 genes)
mes
Manihot esculenta (3 genes)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (4 genes)
osaindica
Oryza sativa ssp. indica (3 genes)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (4 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (14 genes)
zma
Zea mays (3 genes)



The gene family HOM001232 has 93 genes in 22 species (2 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 5, showing 20 records out of 93 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G34130 aly name=scaffold_303641.1;pid=899671;prot=eq;tid=931184 - scaffold_3 No
AL4G08940 aly name=scaffold_400905.1;pid=901404;prot=eq;tid=932917 - scaffold_4 No
AL4G33640 aly name=Al_scaffold_0004_3258;pid=871095;prot=eq;tid=902608 - scaffold_4 No
AL7G16670 aly name=fgenesh1_pm.C_scaffold_7001349;pid=329122;prot=eq;tid=329122 + scaffold_7 No
AL7G36840 aly name=fgenesh2_kg.7__3321__AT5G40880.1;pid=493888;prot=eq;tid=493888 - scaffold_7 No
AL8G16240 aly name=fgenesh2_kg.8__1082__AT5G51980.1;pid=495266;prot=eq;tid=495266 - scaffold_8 No
AT4G25440 ath zinc finger WD40 repeat protein 1 (ZFWD1); FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: xylem; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Zinc finger, CCCH-type (InterPro:IPR000571), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT5G51980.1); Has 28356 Blast hits to 16036 proteins in 564 species: Archae - 44; Bacteria - 4332; Metazoa - 10522; Fungi - 6455; Plants - 3358; Viruses - 0; Other Eukaryotes - 3645 (source: NCBI BLink).;zinc finger WD40 repeat protein 1 transcript=eq;prot=eq; - 4 No
AT5G40880 ath WD-40 repeat family protein / zfwd3 protein (ZFWD3); FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein / zfwd4 protein (ZFWD4) (TAIR:AT5G49200.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;WD-40 repeat family protein / zfwd3 protein (ZFWD3) transcript=eq;prot=eq; + 5 No
AT5G49200 ath WD-40 repeat family protein / zfwd4 protein (ZFWD4); FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: WD40 repeat 2 (InterPro:IPR019782), Zinc finger, CCCH-type (InterPro:IPR000571), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: WD-40 repeat family protein / zfwd3 protein (ZFWD3) (TAIR:AT5G40880.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;WD-40 repeat family protein / zfwd4 protein (ZFWD4) transcript=eq;prot=eq; - 5 No
AT5G51980 ath Transducin/WD40 repeat-like superfamily protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571), WD40 repeat 2 (InterPro:IPR019782), WD40 repeat, conserved site (InterPro:IPR019775), WD40 repeat (InterPro:IPR001680), G-protein beta WD-40 repeat, region (InterPro:IPR020472), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40-repeat-containing domain (InterPro:IPR017986), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: zinc finger WD40 repeat protein 1 (TAIR:AT4G25440.1); Has 29113 Blast hits to 15916 proteins in 570 species: Archae - 36; Bacteria - 4384; Metazoa - 10765; Fungi - 6879; Plants - 3369; Viruses - 0; Other Eukaryotes - 3680 (source: NCBI BLink).;Transducin/WD40 repeat-like superfamily protein transcript=eq;prot=eq; - 5 No
BD1G75370 bdi protein serine/threonine kinase activity, ubiquitin-protein ligase activity (Blast2GO) pid=Bradi1g75370.1;tid=Bradi1g75370.1;GeneName=Bradi1g75370;transcript=eq;prot=eq + Bd1 No
BD2G05567 bdi pid=Bradi2g05567.1;tid=Bradi2g05567.1;GeneName=Bradi2g05567;transcript=eq;prot=eq + Bd2 No
BD3G51650 bdi myosin heavy chain kinase activity (Blast2GO) pid=Bradi3g51650.1;tid=Bradi3g51650.1;GeneName=Bradi3g51650;transcript=eq;prot=eq + Bd3 No
CP00004G02100 cpa name=evm.TU.supercontig_4.210;pid=evm.TU.supercontig_4.210;prot=eq;transcript=eq - supercontig_4 No
CP00090G00190 cpa name=evm.TU.supercontig_90.19;pid=evm.TU.supercontig_90.19;prot=eq;transcript=eq - supercontig_90 No
CP00519G00010 cpa name=evm.TU.supercontig_519.1;pid=evm.TU.supercontig_519.1;prot=eq;transcript=eq + supercontig_519 No
CP26924G00020 cpa name=evm.TU.contig_26924.2;pid=evm.TU.contig_26924.2;prot=eq;transcript=eq - contig_26924 No
CP39126G00010 cpa name=evm.TU.contig_39126.1;pid=evm.TU.contig_39126.1;prot=eq;transcript=eq - contig_39126 No
CR12G05450 cre name=pasa_Sanger_mRNA7012;pid=425607;prot=eq;tid=397262;transcript=eq + chromosome_12 No
FV2G19270 fve Zinc finger CCCH domain-containing protein 63 (AtC3H63) (probable) transcript=eq;prot=eq;pid=gene27414 + LG2 No
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