Gene family  

Sub-families
ORTHO003742 (28 genes in 18 species)
ORTHO011183 (17 genes in 15 species)
ORTHO017555 (7 genes in 7 species)
View all sub-families (6)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (5 genes)
ath
Arabidopsis thaliana (6 genes)
bdi
Brachypodium distachyon (4 genes)
cpa
Carica papaya (5 genes)
fve
Fragaria vesca (4 genes)
gma
Glycine max (5 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (7 genes)
mes
Manihot esculenta (6 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (5 genes)
osa
Oryza sativa ssp. japonica (6 genes)
osaindica
Oryza sativa ssp. indica (6 genes)
ppa
Physcomitrella patens (3 genes)
ptr
Populus trichocarpa (7 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (3 genes)
tca
Theobroma cacao (3 genes)
vvi
Vitis vinifera (4 genes)
zma
Zea mays (9 genes)



The gene family HOM001225 has 94 genes in 20 species (10 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 5, showing 20 records out of 94 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G04410 aly name=fgenesh2_kg.1__438__AT1G04960.1;pid=470484;prot=eq;tid=470484 - scaffold_1 No
AL1G26450 aly name=scaffold_102812.1;pid=890018;prot=eq;tid=921531 - scaffold_1 No
AL1G28350 aly name=scaffold_103041.1;pid=890247;prot=eq;tid=921760 + scaffold_1 No
AL1G28360 aly name=Al_scaffold_0001_2798;pid=881031;prot=eq;tid=912544 - scaffold_1 No
AL5G01850 aly name=scaffold_500201.1;pid=904497;prot=eq;tid=936010 - scaffold_5 No
AT1G04960 ath Protein of unknown function (DUF1664); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1664 (InterPro:IPR012458); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1664) (TAIR:AT1G27000.1); Has 160 Blast hits to 159 proteins in 23 species: Archae - 0; Bacteria - 6; Metazoa - 0; Fungi - 0; Plants - 152; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).;Protein of unknown function (DUF1664) transcript=eq;prot=eq; - 1 No
AT1G24265 ath Protein of unknown function (DUF1664); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1664 (InterPro:IPR012458); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1664) (TAIR:AT1G24267.1).;Protein of unknown function (DUF1664) transcript=eq;prot=eq; + 1 No
AT1G24267 ath Protein of unknown function (DUF1664); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1664 (InterPro:IPR012458); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1664) (TAIR:AT1G24265.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;Protein of unknown function (DUF1664) transcript=eq;prot=eq; - 1 No
AT1G27000 ath Protein of unknown function (DUF1664); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1664 (InterPro:IPR012458); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1664) (TAIR:AT2G02730.2); Has 199 Blast hits to 190 proteins in 29 species: Archae - 0; Bacteria - 14; Metazoa - 2; Fungi - 2; Plants - 161; Viruses - 0; Other Eukaryotes - 20 (source: NCBI BLink).;Protein of unknown function (DUF1664) transcript=eq;prot=eq; + 1 No
AT1G44674 ath Protein of unknown function (DUF1664); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1664 (InterPro:IPR012458); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1664) (TAIR:AT1G27000.1); Has 62 Blast hits to 62 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 62; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;Protein of unknown function (DUF1664) transcript=eq;prot=eq; + 1 Yes
AT2G02730 ath Protein of unknown function (DUF1664); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1664 (InterPro:IPR012458); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1664) (TAIR:AT1G27000.1); Has 150 Blast hits to 150 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 150; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;Protein of unknown function (DUF1664) transcript=eq;prot=eq; - 2 No
BD2G03750 bdi pid=Bradi2g03750.1;tid=Bradi2g03750.1;GeneName=Bradi2g03750;transcript=eq;prot=eq - Bd2 No
BD2G33560 bdi pid=Bradi2g33560.1;tid=Bradi2g33560.1;GeneName=Bradi2g33560;transcript=eq;prot=eq - Bd2 No
BD2G39880 bdi pid=Bradi2g39880.1;tid=Bradi2g39880.1;GeneName=Bradi2g39880;transcript=eq;prot=eq + Bd2 No
BD4G33460 bdi pid=Bradi4g33460.1;tid=Bradi4g33460.1;GeneName=Bradi4g33460;transcript=eq;prot=eq + Bd4 No
CP00043G00740 cpa name=evm.TU.supercontig_43.74;pid=evm.TU.supercontig_43.74;prot=eq;transcript=eq - supercontig_43 Yes
CP00132G00570 cpa name=evm.TU.supercontig_132.57;pid=evm.TU.supercontig_132.57;prot=eq;transcript=eq + supercontig_132 No
CP00132G00580 cpa name=evm.TU.supercontig_132.58;pid=evm.TU.supercontig_132.58;prot=eq;transcript=eq + supercontig_132 No
CP00200G00220 cpa name=evm.TU.supercontig_200.22;pid=evm.TU.supercontig_200.22;prot=eq;transcript=eq + supercontig_200 No
CP28586G00020 cpa name=evm.TU.contig_28586.2;pid=evm.TU.contig_28586.2;prot=eq;transcript=eq + contig_28586 No
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