Gene family  

Sub-families
ORTHO002760 (31 genes in 20 species)
ORTHO003814 (28 genes in 25 species)
ORTHO014058 (12 genes in 9 species)
View all sub-families (8)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (4 genes)
ath
Arabidopsis thaliana (4 genes)
bdi
Brachypodium distachyon (3 genes)
cpa
Carica papaya (4 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (3 genes)
gma
Glycine max (8 genes)
lja
Lotus japonicus (3 genes)
mdo
Malus domestica (7 genes)
mes
Manihot esculenta (4 genes)
mrcc299
Micromonas sp. RCC299 (4 genes)
mtr
Medicago truncatula (3 genes)
olu
Ostreococcus lucimarinus (4 genes)
osa
Oryza sativa ssp. japonica (3 genes)
osaindica
Oryza sativa ssp. indica (3 genes)
ota
Ostreococcus tauri (4 genes)
ppa
Physcomitrella patens (3 genes)
ptr
Populus trichocarpa (6 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (4 genes)
smo
Selaginella moellendorffii (3 genes)
tca
Theobroma cacao (4 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (3 genes)
zma
Zea mays (5 genes)



The gene family HOM001222 has 94 genes in 25 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 5, showing 20 records out of 94 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL2G17580 aly name=fgenesh2_kg.2__1190__AT1G69330.1;pid=476060;prot=eq;tid=476060 - scaffold_2 No
AL2G23250 aly name=fgenesh2_kg.2__1700__AT1G74370.1;pid=476570;prot=eq;tid=476570 - scaffold_2 No
AL3G01050 aly name=fgenesh2_kg.3__127__AT3G01060.1;pid=477426;prot=eq;tid=477426 + scaffold_3 No
AL5G08880 aly name=fgenesh2_kg.5__689__AT3G29270.2;pid=484697;prot=eq;tid=484697 + scaffold_5 No
AT1G69330 ath RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G29270.2); Has 288 Blast hits to 287 proteins in 41 species: Archae - 0; Bacteria - 0; Metazoa - 134; Fungi - 0; Plants - 144; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).;RING/U-box superfamily protein transcript=eq;prot=eq; - 1 No
AT1G74370 ath RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G29270.2); Has 323 Blast hits to 323 proteins in 56 species: Archae - 0; Bacteria - 0; Metazoa - 171; Fungi - 2; Plants - 134; Viruses - 3; Other Eukaryotes - 13 (source: NCBI BLink).;RING/U-box superfamily protein transcript=eq;prot=eq; - 1 No
AT3G01060 ath unknown protein; Has 640 Blast hits to 638 proteins in 201 species: Archae - 0; Bacteria - 293; Metazoa - 0; Fungi - 71; Plants - 72; Viruses - 0; Other Eukaryotes - 204 (source: NCBI BLink). transcript=eq;prot=eq; - 3 No
AT3G29270 ath RING/U-box superfamily protein; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT1G69330.1); Has 253 Blast hits to 253 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 108; Fungi - 2; Plants - 132; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).;RING/U-box superfamily protein transcript=eq;prot=eq; + 3 No
BD1G16170 bdi RING, subfamily zinc finger (C3HC4-type RING finger) family protein pid=Bradi1g16170.3;tid=Bradi1g16170.3;GeneName=Bradi1g16170;transcript=eq;prot=eq + Bd1 No
BD1G70360 bdi RING, subfamily RING zinc finger protein-like, putative pid=Bradi1g70360.1;tid=Bradi1g70360.1;GeneName=Bradi1g70360;transcript=eq;prot=eq - Bd1 No
BD2G20110 bdi pid=Bradi2g20110.1;tid=Bradi2g20110.1;GeneName=Bradi2g20110;transcript=eq;prot=eq - Bd2 No
CP00001G00960 cpa name=evm.TU.supercontig_1.96;pid=evm.TU.supercontig_1.96;prot=eq;transcript=eq + supercontig_1 No
CP00014G01430 cpa name=evm.TU.supercontig_14.143;pid=evm.TU.supercontig_14.143;prot=eq;transcript=eq + supercontig_14 No
CP00014G01440 cpa name=evm.TU.supercontig_14.144;pid=evm.TU.supercontig_14.144;prot=eq;transcript=eq + supercontig_14 No
CP36103G00010 cpa name=evm.TU.contig_36103.1;pid=evm.TU.contig_36103.1;prot=eq;transcript=eq - contig_36103 No
CR13G00180 cre name=pasa_Sanger_mRNA10932;pid=412002;prot=eq;tid=401225;transcript=eq - chromosome_13 No
FV0G04570 fve RING finger protein 208 (probable) transcript=eq;prot=eq;pid=gene04652 - scf0513158 No
FV6G43280 fve Homoserine O-acetyltransferase (Homoserine transacetylase) (probable) transcript=eq;prot=eq;pid=gene04346 - LG6 No
FV6G43290 fve RING finger protein 208 (probable) transcript=eq;prot=eq;pid=gene04347 - LG6 No
GM01G06800 gma 01 pid=16243643;transcript=eq;prot=eq;name=Glyma01g06800.1 + Gm01 No
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