Gene family  

Sub-families
ORTHO004069 (28 genes in 19 species)
ORTHO008577 (21 genes in 17 species)
ORTHO019701 (6 genes in 5 species)
View all sub-families (4)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (6 genes)
ath
Arabidopsis thaliana (6 genes)
bdi
Brachypodium distachyon (5 genes)
cpa
Carica papaya (4 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (2 genes)
gma
Glycine max (8 genes)
lja
Lotus japonicus (4 genes)
mdo
Malus domestica (5 genes)
mes
Manihot esculenta (7 genes)
mtr
Medicago truncatula (5 genes)
osa
Oryza sativa ssp. japonica (4 genes)
osaindica
Oryza sativa ssp. indica (4 genes)
ppa
Physcomitrella patens (4 genes)
ptr
Populus trichocarpa (8 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (4 genes)
tca
Theobroma cacao (3 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (5 genes)
zma
Zea mays (5 genes)



The gene family HOM001216 has 94 genes in 21 species (2 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 5, showing 20 records out of 94 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G41280 aly name=scaffold_304367.1;pid=900397;prot=eq;tid=931910 - scaffold_3 No
AL4G30970 aly name=scaffold_403239.1;pid=903738;prot=eq;tid=935251 - scaffold_4 No
AL5G30090 aly name=fgenesh2_kg.5__2415__AT3G59570.1;pid=486423;prot=eq;tid=486423 - scaffold_5 No
AL7G13260 aly name=scaffold_701404.1;pid=913662;prot=eq;tid=945175 - scaffold_7 No
AL7G14890 aly name=fgenesh2_kg.7__1520__AT4G27100.1;pid=492087;prot=eq;tid=492087 - scaffold_7 No
AL8G20090 aly name=fgenesh2_kg.8__1375__AT5G54780.1;pid=495559;prot=eq;tid=495559 - scaffold_8 No
AT2G20440 ath Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT4G28550.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;Ypt/Rab-GAP domain of gyp1p superfamily protein transcript=eq;prot=eq; - 2 No
AT2G43490 ath Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT3G59570.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Ypt/Rab-GAP domain of gyp1p superfamily protein transcript=eq;prot=eq; - 2 No
AT3G59570 ath Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT2G43490.3); Has 3852 Blast hits to 3356 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 1970; Fungi - 763; Plants - 660; Viruses - 0; Other Eukaryotes - 459 (source: NCBI BLink).;Ypt/Rab-GAP domain of gyp1p superfamily protein transcript=eq;prot=eq; - 3 No
AT4G27100 ath Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT5G54780.1); Has 4127 Blast hits to 3971 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 2318; Fungi - 724; Plants - 626; Viruses - 0; Other Eukaryotes - 459 (source: NCBI BLink).;Ypt/Rab-GAP domain of gyp1p superfamily protein transcript=eq;prot=eq; + 4 No
AT4G28550 ath Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: sperm cell, root, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT2G20440.2); Has 4375 Blast hits to 4233 proteins in 225 species: Archae - 0; Bacteria - 0; Metazoa - 2348; Fungi - 794; Plants - 640; Viruses - 0; Other Eukaryotes - 593 (source: NCBI BLink).;Ypt/Rab-GAP domain of gyp1p superfamily protein transcript=eq;prot=eq; + 4 No
AT5G54780 ath Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: mitochondrion; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT4G27100.2); Has 4120 Blast hits to 4004 proteins in 231 species: Archae - 0; Bacteria - 0; Metazoa - 2315; Fungi - 731; Plants - 615; Viruses - 0; Other Eukaryotes - 459 (source: NCBI BLink).;Ypt/Rab-GAP domain of gyp1p superfamily protein transcript=eq;prot=eq; - 5 No
BD1G00450 bdi Rab GTPase activator activity (Blast2GO) pid=Bradi1g00450.1;tid=Bradi1g00450.1;GeneName=Bradi1g00450;transcript=eq;prot=eq - Bd1 No
BD1G74660 bdi Rab GTPase activator activity (Blast2GO) pid=Bradi1g74660.1;tid=Bradi1g74660.1;GeneName=Bradi1g74660;transcript=eq;prot=eq + Bd1 No
BD3G54840 bdi Rab GTPase activator activity (Blast2GO) pid=Bradi3g54840.1;tid=Bradi3g54840.1;GeneName=Bradi3g54840;transcript=eq;prot=eq - Bd3 No
BD3G60960 bdi pid=Bradi3g60960.1;tid=Bradi3g60960.1;GeneName=Bradi3g60960;transcript=eq;prot=eq + Bd3 No
BD5G04330 bdi Rab GTPase activator activity (Blast2GO) pid=Bradi5g04330.1;tid=Bradi5g04330.1;GeneName=Bradi5g04330;transcript=eq;prot=eq - Bd5 No
CP00028G00590 cpa name=evm.TU.supercontig_28.59;pid=evm.TU.supercontig_28.59;prot=eq;transcript=eq - supercontig_28 No
CP00097G00500 cpa name=evm.TU.supercontig_97.50;pid=evm.TU.supercontig_97.50;prot=eq;transcript=eq + supercontig_97 No
CP00165G00280 cpa name=evm.TU.supercontig_165.28;pid=evm.TU.supercontig_165.28;prot=eq;transcript=eq + supercontig_165 No
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