Gene family  

Sub-families
ORTHO001881 (35 genes in 24 species)
ORTHO002290 (33 genes in 24 species)
ORTHO033194 (3 genes in 2 species)
View all sub-families (5)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (7 genes)
ath
Arabidopsis thaliana (7 genes)
bdi
Brachypodium distachyon (5 genes)
cpa
Carica papaya (5 genes)
cre
Chlamydomonas reinhardtii (2 genes)
fve
Fragaria vesca (5 genes)
gma
Glycine max (7 genes)
lja
Lotus japonicus (10 genes)
mdo
Malus domestica (4 genes)
mes
Manihot esculenta (4 genes)
mrcc299
Micromonas sp. RCC299 (2 genes)
mtr
Medicago truncatula (3 genes)
olu
Ostreococcus lucimarinus (2 genes)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (3 genes)
ota
Ostreococcus tauri (2 genes)
ppa
Physcomitrella patens (3 genes)
ptr
Populus trichocarpa (5 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (1 gene)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (4 genes)
vca
Volvox carteri (2 genes)
vvi
Vitis vinifera (3 genes)
zma
Zea mays (2 genes)



The gene family HOM001215 has 94 genes in 25 species (3 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 5, showing 20 records out of 94 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G45940 aly name=fgenesh1_pg.C_scaffold_1003839;pid=337274;prot=eq;tid=337274 + scaffold_1 No
AL4G01460 aly name=scaffold_400154.1;pid=900653;prot=eq;tid=932166 - scaffold_4 Yes
AL6G26030 aly name=fgenesh2_kg.6__2567__AT5G27640.2;pid=489433;prot=eq;tid=489433 - scaffold_6 No
AL6G27100 aly name=fgenesh1_pg.C_scaffold_6002278;pid=351685;prot=eq;tid=351685 - scaffold_6 No
AL6G27630 aly name=fgenesh2_kg.6__2697__AT5G25780.1;pid=489563;prot=eq;tid=489563 + scaffold_6 No
AL6G29230 aly name=Al_scaffold_0006_2821;pid=863312;prot=eq;tid=894825 - scaffold_6 No
AL7G14300 aly name=fgenesh2_kg.7__1455__AT4G27650.1;pid=492022;prot=eq;tid=492022 + scaffold_7 No
AT1G49015 ath DPP6 N-terminal domain-like protein; FUNCTIONS IN: RNA binding, translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Eukaryotic translation initiation factor 2A, central region (InterPro:IPR013979), Translation initiation factor eIF-3b (InterPro:IPR011400); BEST Arabidopsis thaliana protein match is: eukaryotic translation initiation factor 3B-2 (TAIR:AT5G25780.1); Has 427 Blast hits to 427 proteins in 208 species: Archae - 0; Bacteria - 0; Metazoa - 141; Fungi - 167; Plants - 63; Viruses - 0; Other Eukaryotes - 56 (source: NCBI BLink).;DPP6 N-terminal domain-like protein transcript=eq;prot=eq; + 1 No
AT1G53265 ath unknown protein; Has 4 Blast hits to 4 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). transcript=eq;prot=eq; - 1 Yes
AT3G58390 ath Eukaryotic release factor 1 (eRF1) family protein; FUNCTIONS IN: translation release factor activity; INVOLVED IN: translational termination, translation; EXPRESSED IN: sperm cell, cultured cell; CONTAINS InterPro DOMAIN/s: eRF1 domain 2 (InterPro:IPR005141), eRF1 domain 3 (InterPro:IPR005142), eRF1 domain 1 (InterPro:IPR005140), Probable translation factor pelota (InterPro:IPR004405); BEST Arabidopsis thaliana protein match is: Eukaryotic release factor 1 (eRF1) family protein (TAIR:AT4G27650.1); Has 768 Blast hits to 765 proteins in 318 species: Archae - 259; Bacteria - 0; Metazoa - 140; Fungi - 157; Plants - 51; Viruses - 1; Other Eukaryotes - 160 (source: NCBI BLink).;Eukaryotic release factor 1 (eRF1) family protein transcript=eq;prot=eq; - 3 No
AT4G27650 ath Encodes Arabidopsis homolog of Drosophila pelota protein.;Eukaryotic release factor 1 (eRF1) family protein transcript=eq;prot=eq; - 4 No
AT5G25780 ath member of eIF3b - eukaryotic initiation factor 3b;eukaryotic translation initiation factor 3B-2 transcript=eq;prot=eq; - 5 No
AT5G27640 ath encodes a member of eukaryotic translation initiation factor 3B family.;translation initiation factor 3B1 transcript=eq;prot=eq; - 5 No
AT5G35230 ath unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). transcript=eq;prot=eq; - 5 Yes
BD1G13850 bdi RRM domain containing protein similar to a member of eukaryotic translation initiation factor 3B family, [Arabidopsis thaliana] AT5G27640 pid=Bradi1g13850.1;tid=Bradi1g13850.1;GeneName=Bradi1g13850;transcript=eq;prot=eq - Bd1 No
BD2G43260 bdi endoribonuclease activity (Blast2GO) pid=Bradi2g43260.1;tid=Bradi2g43260.1;GeneName=Bradi2g43260;transcript=eq;prot=eq + Bd2 No
BD4G32400 bdi endoribonuclease activity (Blast2GO) pid=Bradi4g32400.1;tid=Bradi4g32400.1;GeneName=Bradi4g32400;transcript=eq;prot=eq - Bd4 No
BD4G40280 bdi RRM domain containing protein similar to a member of eukaryotic translation initiation factor 3B family, ATTIF3B1, EIF3B, [Arabidopsis thaliana] AT5G27640 pid=Bradi4g40280.1;tid=Bradi4g40280.1;GeneName=Bradi4g40280;transcript=eq;prot=eq + Bd4 No
BD5G24820 bdi endoribonuclease activity (Blast2GO) pid=Bradi5g24820.1;tid=Bradi5g24820.1;GeneName=Bradi5g24820;transcript=eq;prot=eq + Bd5 No
CP00017G01330 cpa name=evm.TU.supercontig_17.133;pid=evm.TU.supercontig_17.133;prot=eq;transcript=eq - supercontig_17 No
<< previous
1 | 2 | 3 | 4 | 5 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier