Gene family  

Sub-families
ORTHO001272 (40 genes in 22 species)
ORTHO002562 (32 genes in 25 species)
ORTHO019896 (6 genes in 6 species)
View all sub-families (7)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (4 genes)
ath
Arabidopsis thaliana (2 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (7 genes)
cre
Chlamydomonas reinhardtii (3 genes)
fve
Fragaria vesca (2 genes)
gma
Glycine max (4 genes)
lja
Lotus japonicus (6 genes)
mdo
Malus domestica (11 genes)
mes
Manihot esculenta (4 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (10 genes)
olu
Ostreococcus lucimarinus (3 genes)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (3 genes)
ota
Ostreococcus tauri (2 genes)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (5 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (4 genes)
smo
Selaginella moellendorffii (3 genes)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (2 genes)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (7 genes)



The gene family HOM001207 has 95 genes in 25 species (7 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 5, showing 20 records out of 95 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL2G00240 aly name=scaffold_200027.1;pid=892953;prot=eq;tid=924466 - scaffold_2 No
AL5G17000 aly name=fgenesh1_pm.C_scaffold_5000964;pid=323420;prot=eq;tid=323420 + scaffold_5 No
AL5G17600 aly name=scaffold_501822.1;pid=906118;prot=eq;tid=937631 - scaffold_5 Yes
AL7G37010 aly name=scaffold_703887.1;pid=916145;prot=eq;tid=947658 + scaffold_7 No
AT3G48190 ath encodes a homolog of the human ATM gene, which is mutated in ataxia telangiectasia, a chromosome instability disorder. Characterization of mutants suggest a role in repairing DNA in response to ionizing radiation as well as during meiosis. The protein has kinase domains and shows kinase activity in orthologs. There is also evidence that ATM might be involved in the telomerase-independent process known as Alternative Lengthening of Telomeres.;ataxia-telangiectasia mutated transcript=eq;prot=eq; + 3 No
AT5G40820 ath Encodes a Arabidopsis ortholog of the ATR protein kinase that is involved in a wide range of responses to DNA damage and plays a central role in cell-cycle regulation. Dominant loss of function alleles identified as suppressors of ALS also exhibit increased tolerance to aluminum. This may be due to the inhibition of terminal differentiation of the root apex upon exposure to Al.;Ataxia telangiectasia-mutated and RAD3-related transcript=eq;prot=eq; - 5 No
BD1G30007 bdi pid=Bradi1g30007.1;tid=Bradi1g30007.1;GeneName=Bradi1g30007;transcript=eq;prot=eq - Bd1 No
BD2G00627 bdi pid=Bradi2g00627.1;tid=Bradi2g00627.1;GeneName=Bradi2g00627;transcript=eq;prot=eq + Bd2 No
CP00020G01260 cpa name=evm.TU.supercontig_20.126;pid=evm.TU.supercontig_20.126;prot=eq;transcript=eq - supercontig_20 No
CP00076G00480 cpa name=evm.TU.supercontig_76.48;pid=evm.TU.supercontig_76.48;prot=eq;transcript=eq + supercontig_76 Yes
CP00076G00490 cpa name=evm.TU.supercontig_76.49;pid=evm.TU.supercontig_76.49;prot=eq;transcript=eq + supercontig_76 No
CP00076G00500 cpa name=evm.TU.supercontig_76.50;pid=evm.TU.supercontig_76.50;prot=eq;transcript=eq + supercontig_76 No
CP00076G00530 cpa name=evm.TU.supercontig_76.53;pid=evm.TU.supercontig_76.53;prot=eq;transcript=eq + supercontig_76 No
CP00076G00540 cpa name=evm.TU.supercontig_76.54;pid=evm.TU.supercontig_76.54;prot=eq;transcript=eq + supercontig_76 No
CP01166G00010 cpa name=evm.TU.supercontig_1166.1;pid=evm.TU.supercontig_1166.1;prot=eq;transcript=eq - supercontig_1166 No
CR10G10650 cre name=au.g974_t1;pid=282428;prot=eq;tid=282435;transcript=eq + chromosome_10 No
CR13G00480 cre name=fgenesh2_pg.C_scaffold_2000050;pid=168404;prot=eq;tid=168404;transcript=eq - chromosome_13 No
CR18G00760 cre name=pasa_Sanger_mRNA34000;pid=411498;prot=eq;tid=424553;transcript=eq - scaffold_18 Yes
FV2G19380 fve Serine/threonine-protein kinase ATM (AtATM) (probable) transcript=eq;prot=eq;pid=gene27424 + LG2 No
FV2G27310 fve Serine/threonine-protein kinase ATR (AtATR) (similar to) transcript=eq;prot=eq;pid=gene23751 - LG2 No
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