Gene family  

Sub-families
ORTHO001668 (36 genes in 24 species)
ORTHO053932 (2 genes in 1 species)
ORTHO054184 (2 genes in 1 species)
View all sub-families (6)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (1 gene)
bdi
Brachypodium distachyon (5 genes)
cpa
Carica papaya (1 gene)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (2 genes)
gma
Glycine max (3 genes)
lja
Lotus japonicus (17 genes)
mdo
Malus domestica (4 genes)
mes
Manihot esculenta (4 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (14 genes)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (1 gene)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (5 genes)
rco
Ricinus communis (7 genes)
sbi
Sorghum bicolor (5 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (3 genes)
vvi
Vitis vinifera (8 genes)
zma
Zea mays (4 genes)



The gene family HOM001193 has 96 genes in 24 species (6 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 5, showing 20 records out of 96 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL2G10280 aly name=scaffold_201046.1;pid=893972;prot=eq;tid=925485 + scaffold_2 No
AL4G01140 aly name=Al_scaffold_0004_114;pid=867951;prot=eq;tid=899464 + scaffold_4 Yes
ATCG00170 ath RNA polymerase beta' subunit-2;DNA-directed RNA polymerase family protein transcript=eq;prot=eq; - chloroplast No
BD1G05720 bdi pid=Bradi1g05720.1;tid=Bradi1g05720.1;GeneName=Bradi1g05720;transcript=eq;prot=eq + Bd1 No
BD1G05730 bdi pid=Bradi1g05730.1;tid=Bradi1g05730.1;GeneName=Bradi1g05730;transcript=eq;prot=eq + Bd1 No
BD1G39200 bdi DNA-directed RNA polymerase activity (Blast2GO) pid=Bradi1g39200.1;tid=Bradi1g39200.1;GeneName=Bradi1g39200;transcript=eq;prot=eq + Bd1 No
BD5G23820 bdi DNA-directed RNA polymerase activity (Blast2GO) pid=Bradi5g23820.1;tid=Bradi5g23820.1;GeneName=Bradi5g23820;transcript=eq;prot=eq + Bd5 No
BD5G23830 bdi DNA-directed RNA polymerase activity (Blast2GO) pid=Bradi5g23830.1;tid=Bradi5g23830.1;GeneName=Bradi5g23830;transcript=eq;prot=eq + Bd5 No
CPCG00180 cpa rpoC2;RNA polymerase beta'' chain;protein_id=ABY86772.1; transl_table=11; - chloroplast No
CRCG00680 cre rpoC2;RNA polymerase beta' subunit;protein_id=DAA00948.1; atypical; putative;transl_table=11; + chloroplast No
FV0G57970 fve DNA-directed RNA polymerase subunit beta'' (RNA polymerase subunit beta'') (similar to) transcript=eq;prot=eq;pid=gene32819 + scf0510915 No
FV0G60270 fve DNA-directed RNA polymerase subunit beta'' (RNA polymerase subunit beta'') (similar to) transcript=eq;prot=eq;pid=gene02751 - scf0512789 No
GM02G38600 gma 02 pid=16249483;transcript=eq;prot=eq;name=Glyma02g38600.1 + Gm02 No
GM04G21360 gma 04 pid=16256190;transcript=eq;prot=eq;name=Glyma04g21360.1 + Gm04 No
GMCG00380 gma rpoC2;RNA polymerase beta' subunit;protein_id=ABC25125.1; transl_table=11; + chloroplast No
LJ0G088650 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_029085;name=LjSGA_029085.1 + LjSGA_029085 Yes
LJ0G117480 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_037041;name=LjSGA_037041.0.1 + LjSGA_037041 No
LJ0G132750 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_041496;name=LjSGA_041496.0.1 + LjSGA_041496 No
LJ0G239690 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_079032;name=LjSGA_079032.1 + LjSGA_079032 No
LJ0G293900 lja partial;prot=eq;transcript=eq;scaffold=LjSGA_101069;name=LjSGA_101069.1 - LjSGA_101069 No
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