Gene family  

Sub-families
ORTHO002077 (34 genes in 22 species)
ORTHO023984 (5 genes in 5 species)
ORTHO049359 (2 genes in 2 species)
View all sub-families (5)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (2 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (4 genes)
cpa
Carica papaya (2 genes)
cre
Chlamydomonas reinhardtii (7 genes)
fve
Fragaria vesca (2 genes)
gma
Glycine max (3 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (4 genes)
mes
Manihot esculenta (5 genes)
mrcc299
Micromonas sp. RCC299 (9 genes)
mtr
Medicago truncatula (5 genes)
olu
Ostreococcus lucimarinus (3 genes)
osa
Oryza sativa ssp. japonica (4 genes)
osaindica
Oryza sativa ssp. indica (5 genes)
ota
Ostreococcus tauri (4 genes)
ppa
Physcomitrella patens (10 genes)
ptr
Populus trichocarpa (4 genes)
rco
Ricinus communis (2 genes)
sbi
Sorghum bicolor (4 genes)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (3 genes)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (3 genes)



The gene family HOM001188 has 96 genes in 25 species (5 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 5, showing 20 records out of 96 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL6G12220 aly name=fgenesh2_kg.6__1210__AT5G12320.1;pid=488076;prot=eq;tid=488076 + scaffold_6 No
AL7G38020 aly name=fgenesh1_pg.C_scaffold_7003163;pid=355990;prot=eq;tid=355990 + scaffold_7 No
AT2G17390 ath Highly homologous to AKR2A. Involved in chloroplast biogenesis. Double mutants of AKR2A and AKR2B have yellow leaves, significantly reduced chloroplast proteins, and no thylakoid membranes.;ankyrin repeat-containing 2B transcript=eq;prot=eq; + 2 No
AT4G35450 ath Involved in targeting of chloroplast outer membrane proteins to the chloroplast. Double mutants of AKR2A and the highly homologous AKR2B have yellow leaves, significantly reduced chloroplast proteins, and no thylakoid membranes.;ankyrin repeat-containing protein 2 transcript=eq;prot=eq; + 4 No
AT5G12320 ath ankyrin repeat family protein; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT4G19150.1); Has 86458 Blast hits to 28632 proteins in 1360 species: Archae - 129; Bacteria - 7616; Metazoa - 44184; Fungi - 6856; Plants - 3179; Viruses - 915; Other Eukaryotes - 23579 (source: NCBI BLink).;ankyrin repeat family protein transcript=eq;prot=eq; + 5 No
BD1G01480 bdi pid=Bradi1g01480.1;tid=Bradi1g01480.1;GeneName=Bradi1g01480;transcript=eq;prot=eq - Bd1 No
BD1G19030 bdi histone-lysine N-methyltransferase activity (Blast2GO) pid=Bradi1g19030.1;tid=Bradi1g19030.1;GeneName=Bradi1g19030;transcript=eq;prot=eq + Bd1 No
BD3G41720 bdi NAD+ ADP-ribosyltransferase activity, zinc ion binding (Blast2GO) pid=Bradi3g41720.1;tid=Bradi3g41720.1;GeneName=Bradi3g41720;transcript=eq;prot=eq + Bd3 No
BD4G34990 bdi protein serine/threonine kinase activity (Blast2GO) pid=Bradi4g34990.1;tid=Bradi4g34990.1;GeneName=Bradi4g34990;transcript=eq;prot=eq + Bd4 No
CP00063G00420 cpa name=evm.TU.supercontig_63.42;pid=evm.TU.supercontig_63.42;prot=eq;warning=only partially equal protein - supercontig_63 No
CP00482G00030 cpa name=evm.TU.supercontig_482.3;pid=evm.TU.supercontig_482.3;prot=eq;transcript=eq - supercontig_482 No
CR02G05470 cre name=Chlre2_kg.scaffold_5000357;pid=141947;prot=eq;tid=141947;transcript=eq + chromosome_2 No
CR03G05260 cre name=OVA_Chlre2_kg.scaffold_9000144;pid=205780;prot=eq;tid=205785;transcript=eq + chromosome_3 No
CR05G00240 cre name=e_gwH.76.21.1;pid=108115;prot=eq;tid=108115;transcript=eq + chromosome_5 No
CR06G08180 cre name=e_gwW.26.141.1;pid=118928;prot=eq;tid=118928;transcript=eq - chromosome_6 No
CR14G01410 cre name=estExt_fgenesh1_pg.C_430081;pid=36026;prot=eq;tid=36026;transcript=eq - chromosome_14 No
CR16G05430 cre name=Chlre2_kg.scaffold_28000093;pid=149145;prot=eq;tid=149145;transcript=eq + chromosome_16 No
CR17G01260 cre name=estExt_fgenesh2_pg.C_130191;pid=189100;prot=eq;tid=189100;transcript=eq + chromosome_17 No
FV1G29830 fve Ankyrin repeat domain-containing protein 2 (AtAKR2) (probable) transcript=eq;prot=eq;pid=gene12360 + LG1 No
FV2G12840 fve Ankyrin repeat domain-containing protein 2 (AtAKR2) (similar to) transcript=eq;prot=eq;pid=gene17130 - LG2 No
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