Gene family  

Sub-families
ORTHO000516 (55 genes in 23 species)
ORTHO037724 (3 genes in 1 species)
ORTHO058471 (2 genes in 1 species)
View all sub-families (4)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (3 genes)
cpa
Carica papaya (2 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (4 genes)
gma
Glycine max (10 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (6 genes)
mes
Manihot esculenta (5 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (17 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (3 genes)
osaindica
Oryza sativa ssp. indica (4 genes)
ota
Ostreococcus tauri (2 genes)
ppa
Physcomitrella patens (7 genes)
ptr
Populus trichocarpa (7 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (3 genes)
tca
Theobroma cacao (2 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (5 genes)



The gene family HOM001177 has 97 genes in 24 species (16 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 5, showing 20 records out of 97 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G03850 aly name=fgenesh2_kg.1__380__AT1G04480.1;pid=470426;prot=eq;tid=470426 + scaffold_1 No
AL3G04000 aly name=scaffold_300444.1;pid=896474;prot=eq;tid=927987 + scaffold_3 No
AL4G18590 aly name=fgenesh2_kg.4__1338__AT2G33370.1;pid=482278;prot=eq;tid=482278 - scaffold_4 No
AT1G04480 ath Ribosomal protein L14p/L23e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L14b/L23e (InterPro:IPR000218), Ribosomal protein L14 conserved site (InterPro:IPR019972); BEST Arabidopsis thaliana protein match is: Ribosomal protein L14p/L23e family protein (TAIR:AT3G04400.1); Has 9301 Blast hits to 9300 proteins in 3178 species: Archae - 321; Bacteria - 5427; Metazoa - 383; Fungi - 266; Plants - 815; Viruses - 0; Other Eukaryotes - 2089 (source: NCBI BLink).;Ribosomal protein L14p/L23e family protein transcript=eq;prot=eq; + 1 No
AT2G33370 ath Ribosomal protein L14p/L23e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, cytosolic large ribosomal subunit, nucleolus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L14b/L23e (InterPro:IPR000218), Ribosomal protein L14 conserved site (InterPro:IPR019972); BEST Arabidopsis thaliana protein match is: Ribosomal protein L14p/L23e family protein (TAIR:AT3G04400.1); Has 9301 Blast hits to 9300 proteins in 3178 species: Archae - 321; Bacteria - 5427; Metazoa - 383; Fungi - 266; Plants - 815; Viruses - 0; Other Eukaryotes - 2089 (source: NCBI BLink).;Ribosomal protein L14p/L23e family protein transcript=eq;prot=eq; - 2 No
AT3G04400 ath embryo defective 2171 (emb2171); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, embryo development ending in seed dormancy; LOCATED IN: ribosome, cytosolic large ribosomal subunit; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L14b/L23e (InterPro:IPR000218), Ribosomal protein L14 conserved site (InterPro:IPR019972); BEST Arabidopsis thaliana protein match is: Ribosomal protein L14p/L23e family protein (TAIR:AT2G33370.1); Has 9322 Blast hits to 9321 proteins in 3192 species: Archae - 322; Bacteria - 5444; Metazoa - 383; Fungi - 267; Plants - 817; Viruses - 0; Other Eukaryotes - 2089 (source: NCBI BLink).;Ribosomal protein L14p/L23e family protein transcript=eq;prot=eq; + 3 No
BD1G75790 bdi pid=Bradi1g75790.1;tid=Bradi1g75790.1;GeneName=Bradi1g75790;transcript=eq;prot=eq - Bd1 No
BD3G28300 bdi pid=Bradi3g28300.1;tid=Bradi3g28300.1;GeneName=Bradi3g28300;transcript=eq;prot=eq - Bd3 No
BD3G55140 bdi pid=Bradi3g55140.1;tid=Bradi3g55140.1;GeneName=Bradi3g55140;transcript=eq;prot=eq + Bd3 No
CP00044G00080 cpa name=evm.TU.supercontig_44.8;pid=evm.TU.supercontig_44.8;prot=eq;transcript=eq + supercontig_44 No
CP33972G00010 cpa name=evm.TU.contig_33972.1;pid=evm.TU.contig_33972.1;prot=eq;transcript=eq - contig_33972 No
CR04G00050 cre name=acegs_kg.scaffold_40000025;pid=159282;prot=eq;tid=159282;transcript=eq + chromosome_4 No
FV0G26770 fve 60S ribosomal protein L23 (similar to) transcript=eq;prot=eq;pid=gene16681 - scf0513168 No
FV2G10060 fve 60S ribosomal protein L23 transcript=eq;prot=eq;pid=gene08322 - LG2 No
FV4G01380 fve Histone-lysine N-methyltransferase SUVR4 (Su(var)3-9-related protein 4) (probable) transcript=eq;prot=eq;pid=gene11562 - LG4 No
FV5G08820 fve 60S ribosomal protein L23 (similar to) transcript=eq;prot=eq;pid=gene09976 + LG5 No
GM02G13300 gma 02 pid=16247949;transcript=eq;prot=eq;name=Glyma02g13300.1 - Gm02 Yes
GM03G32380 gma 03 pid=16253057;transcript=eq;prot=eq;name=Glyma03g32380.1 - Gm03 No
GM05G00310 gma 05 pid=16257827;transcript=eq;prot=eq;name=Glyma05g00310.1 + Gm05 No
GM05G35110 gma 05 pid=16260756;transcript=eq;prot=eq;name=Glyma05g35110.1 + Gm05 Yes
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