Gene family  

Sub-families
ORTHO001253 (40 genes in 22 species)
ORTHO006977 (23 genes in 17 species)
ORTHO017486 (7 genes in 7 species)
View all sub-families (6)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (4 genes)
ath
Arabidopsis thaliana (4 genes)
bdi
Brachypodium distachyon (5 genes)
cpa
Carica papaya (5 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (4 genes)
gma
Glycine max (5 genes)
lja
Lotus japonicus (4 genes)
mdo
Malus domestica (6 genes)
mes
Manihot esculenta (6 genes)
mtr
Medicago truncatula (5 genes)
osa
Oryza sativa ssp. japonica (5 genes)
osaindica
Oryza sativa ssp. indica (5 genes)
ppa
Physcomitrella patens (3 genes)
ptr
Populus trichocarpa (6 genes)
rco
Ricinus communis (4 genes)
sbi
Sorghum bicolor (5 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (5 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (3 genes)
zma
Zea mays (10 genes)



The gene family HOM001173 has 97 genes in 22 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 5, showing 20 records out of 97 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G38560 aly name=fgenesh2_kg.1__3710__AT1G43130.1;pid=473756;prot=eq;tid=473756 - scaffold_1 No
AL3G28110 aly name=fgenesh1_pg.C_scaffold_3002393;pid=342630;prot=eq;tid=342630 - scaffold_3 No
AL3G35900 aly name=fgenesh2_kg.3__3157__AT2G20120.1;pid=480456;prot=eq;tid=480456 + scaffold_3 No
AL3G39530 aly name=fgenesh2_kg.3__3454__AT2G18460.2;pid=480753;prot=eq;tid=480753 + scaffold_3 No
AT1G43130 ath like COV 2 (LCV2); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF502 (InterPro:IPR007462); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF502) (TAIR:AT2G20120.1); Has 2432 Blast hits to 2432 proteins in 576 species: Archae - 20; Bacteria - 1089; Metazoa - 1; Fungi - 0; Plants - 154; Viruses - 0; Other Eukaryotes - 1168 (source: NCBI BLink).;like COV 2 transcript=eq;prot=eq; - 1 No
AT2G18460 ath like COV 3 (LCV3); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF502 (InterPro:IPR007462); BEST Arabidopsis thaliana protein match is: like COV 1 (TAIR:AT2G20130.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).;like COV 3 transcript=eq;prot=eq; + 2 No
AT2G20120 ath Encodes an integral membrane protein of unknown function, highly conserved between plants and bacteria; is likely to be involved in a mechanism that negatively regulates the differentiation of vascular tissue in the stem. Mutants display a dramatic increase in vascular tissue development in the stem in place of the interfascicular region that normally separates the vascular bundles.;Protein of unknown function (DUF502) transcript=eq;prot=eq; - 2 No
AT2G20130 ath like COV 1 (LCV1); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF502 (InterPro:IPR007462); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF502) (TAIR:AT2G20120.1); Has 2460 Blast hits to 2460 proteins in 579 species: Archae - 32; Bacteria - 1090; Metazoa - 1; Fungi - 0; Plants - 155; Viruses - 0; Other Eukaryotes - 1182 (source: NCBI BLink).;like COV 1 transcript=eq;prot=eq; - 2 No
BD2G19060 bdi pid=Bradi2g19060.1;tid=Bradi2g19060.1;GeneName=Bradi2g19060;transcript=eq;prot=eq + Bd2 No
BD2G24160 bdi pid=Bradi2g24160.2;tid=Bradi2g24160.2;GeneName=Bradi2g24160;transcript=eq;prot=eq - Bd2 No
BD2G56130 bdi pid=Bradi2g56130.2;tid=Bradi2g56130.2;GeneName=Bradi2g56130;transcript=eq;prot=eq - Bd2 No
BD3G10000 bdi pid=Bradi3g10000.1;tid=Bradi3g10000.1;GeneName=Bradi3g10000;transcript=eq;prot=eq - Bd3 No
BD4G07360 bdi pid=Bradi4g07360.1;tid=Bradi4g07360.1;GeneName=Bradi4g07360;transcript=eq;prot=eq - Bd4 No
CP00006G01000 cpa name=evm.TU.supercontig_6.101;pid=evm.TU.supercontig_6.101;prot=eq;transcript=eq - supercontig_6 No
CP00023G00760 cpa name=evm.TU.supercontig_23.76;pid=evm.TU.supercontig_23.76;prot=eq;transcript=eq + supercontig_23 No
CP00049G00950 cpa name=evm.TU.supercontig_49.95;pid=evm.TU.supercontig_49.95;prot=eq;transcript=eq + supercontig_49 No
CP00072G00380 cpa name=evm.TU.supercontig_72.38;pid=evm.TU.supercontig_72.38;prot=eq;transcript=eq - supercontig_72 No
CP00072G00420 cpa name=evm.TU.supercontig_72.42;pid=evm.TU.supercontig_72.42;prot=eq;transcript=eq - supercontig_72 No
CR17G09430 cre name=estExt_gwp_1H.C_600021;pid=132532;prot=eq;tid=132532;transcript=eq - chromosome_17 No
FV1G06870 fve Serine/threonine-protein kinase PKH3 (probable) transcript=eq;prot=eq;pid=gene30910 + LG1 No
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