Gene family  

Sub-families
ORTHO001357 (39 genes in 20 species)
ORTHO007444 (23 genes in 17 species)
ORTHO027767 (4 genes in 4 species)
View all sub-families (9)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (6 genes)
ath
Arabidopsis thaliana (6 genes)
bdi
Brachypodium distachyon (3 genes)
cpa
Carica papaya (4 genes)
fve
Fragaria vesca (3 genes)
gma
Glycine max (9 genes)
lja
Lotus japonicus (7 genes)
mdo
Malus domestica (9 genes)
mes
Manihot esculenta (4 genes)
mtr
Medicago truncatula (4 genes)
osa
Oryza sativa ssp. japonica (3 genes)
osaindica
Oryza sativa ssp. indica (3 genes)
ppa
Physcomitrella patens (11 genes)
ptr
Populus trichocarpa (5 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (2 genes)
smo
Selaginella moellendorffii (4 genes)
tca
Theobroma cacao (3 genes)
vvi
Vitis vinifera (3 genes)
zma
Zea mays (5 genes)



The gene family HOM001169 has 97 genes in 20 species (2 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 5, showing 20 records out of 97 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL3G23720 aly name=fgenesh1_pm.C_scaffold_3001915;pid=318899;prot=eq;tid=318899 - scaffold_3 No
AL3G23730 aly name=fgenesh1_pm.C_scaffold_3001916;pid=318900;prot=eq;tid=318900 - scaffold_3 No
AL3G38640 aly name=fgenesh2_kg.3__3384__AT2G17840.1;pid=480683;prot=eq;tid=480683 - scaffold_3 No
AL5G20870 aly name=fgenesh2_kg.5__1469__AT3G51250.1;pid=485477;prot=eq;tid=485477 + scaffold_5 No
AL7G04780 aly name=Al_scaffold_0007_445;pid=856946;prot=eq;tid=888459 + scaffold_7 No
AL7G28320 aly name=Al_scaffold_0007_2735;pid=859236;prot=eq;tid=890749 - scaffold_7 No
AT2G17840 ath Identified as drought-inducible gene by differential hybridization. Upregulated by high light, drought, cold and salt stress determined by microarray analysis.;Senescence/dehydration-associated protein-related transcript=eq;prot=eq; - 2 No
AT3G21590 ath Senescence/dehydration-associated protein-related; CONTAINS InterPro DOMAIN/s: Senescence/spartin-associated (InterPro:IPR009686); BEST Arabidopsis thaliana protein match is: Senescence/dehydration-associated protein-related (TAIR:AT4G15450.1); Has 120 Blast hits to 120 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 120; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;Senescence/dehydration-associated protein-related transcript=eq;prot=eq; - 3 No
AT3G21600 ath Senescence/dehydration-associated protein-related; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Senescence/spartin-associated (InterPro:IPR009686); BEST Arabidopsis thaliana protein match is: Senescence/dehydration-associated protein-related (TAIR:AT4G15450.1); Has 135 Blast hits to 135 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 2; Plants - 132; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;Senescence/dehydration-associated protein-related transcript=eq;prot=eq; - 3 No
AT3G51250 ath Senescence/dehydration-associated protein-related; CONTAINS InterPro DOMAIN/s: Senescence/spartin-associated (InterPro:IPR009686); BEST Arabidopsis thaliana protein match is: Senescence/dehydration-associated protein-related (TAIR:AT2G17840.1); Has 288 Blast hits to 288 proteins in 88 species: Archae - 0; Bacteria - 8; Metazoa - 87; Fungi - 46; Plants - 136; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).;Senescence/dehydration-associated protein-related transcript=eq;prot=eq; + 3 No
AT4G15450 ath Senescence/dehydration-associated protein-related; CONTAINS InterPro DOMAIN/s: Senescence/spartin-associated (InterPro:IPR009686); BEST Arabidopsis thaliana protein match is: Senescence/dehydration-associated protein-related (TAIR:AT3G21600.1); Has 171 Blast hits to 171 proteins in 35 species: Archae - 0; Bacteria - 4; Metazoa - 29; Fungi - 0; Plants - 134; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).;Senescence/dehydration-associated protein-related transcript=eq;prot=eq; + 4 No
AT4G35985 ath Senescence/dehydration-associated protein-related; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Senescence/spartin-associated (InterPro:IPR009686); BEST Arabidopsis thaliana protein match is: Senescence/dehydration-associated protein-related (TAIR:AT2G17840.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Senescence/dehydration-associated protein-related transcript=eq;prot=eq; - 4 No
BD1G30150 bdi pid=Bradi1g30150.1;tid=Bradi1g30150.1;GeneName=Bradi1g30150;transcript=eq;prot=eq - Bd1 No
BD1G68210 bdi pid=Bradi1g68210.1;tid=Bradi1g68210.1;GeneName=Bradi1g68210;transcript=eq;prot=eq - Bd1 No
BD2G48557 bdi pid=Bradi2g48557.1;tid=Bradi2g48557.1;GeneName=Bradi2g48557;transcript=eq;prot=eq + Bd2 No
CP00006G02700 cpa name=evm.TU.supercontig_6.271;pid=evm.TU.supercontig_6.271;prot=eq;transcript=eq + supercontig_6 No
CP00037G01460 cpa name=evm.TU.supercontig_37.146;pid=evm.TU.supercontig_37.146;prot=eq;transcript=eq - supercontig_37 No
CP00040G00910 cpa name=evm.TU.supercontig_40.91;pid=evm.TU.supercontig_40.91;prot=eq;transcript=eq + supercontig_40 No
CP00040G00920 cpa name=evm.TU.supercontig_40.92;pid=evm.TU.supercontig_40.92;prot=eq;transcript=eq + supercontig_40 No
FV0G35590 fve Spartin (probable) transcript=eq;prot=eq;pid=gene11295 - scf0513146 No
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