Gene family  

Sub-families
ORTHO003222 (30 genes in 18 species)
ORTHO007671 (22 genes in 19 species)
ORTHO013930 (13 genes in 8 species)
View all sub-families (9)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (5 genes)
ath
Arabidopsis thaliana (5 genes)
bdi
Brachypodium distachyon (3 genes)
cpa
Carica papaya (4 genes)
fve
Fragaria vesca (4 genes)
gma
Glycine max (10 genes)
lja
Lotus japonicus (7 genes)
mdo
Malus domestica (10 genes)
mes
Manihot esculenta (7 genes)
mtr
Medicago truncatula (8 genes)
osa
Oryza sativa ssp. japonica (3 genes)
osaindica
Oryza sativa ssp. indica (3 genes)
ptr
Populus trichocarpa (10 genes)
rco
Ricinus communis (5 genes)
sbi
Sorghum bicolor (3 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (5 genes)
vvi
Vitis vinifera (2 genes)
zma
Zea mays (3 genes)



The gene family HOM001158 has 98 genes in 19 species (1 outlier gene).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 5, showing 20 records out of 98 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G28180 aly name=fgenesh2_kg.1__2857__AT1G24450.1;pid=472903;prot=eq;tid=472903 - scaffold_1 No
AL3G00720 aly name=scaffold_300079.1;pid=896109;prot=eq;tid=927622 + scaffold_3 No
AL5G16820 aly name=fgenesh2_kg.5__1155__AT3G48020.1;pid=485163;prot=eq;tid=485163 + scaffold_5 No
AL6G25300 aly name=fgenesh2_kg.6__2509__AT5G25240.1;pid=489375;prot=eq;tid=489375 - scaffold_6 No
AL8G29380 aly name=fgenesh2_kg.8__2285__AT5G62860.1;pid=496469;prot=eq;tid=496469 + scaffold_8 No
AT1G24450 ath NUCLEAR FUSION DEFECTIVE 2 (NFD2); FUNCTIONS IN: RNA binding, ribonuclease III activity; INVOLVED IN: RNA processing; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease III (InterPro:IPR000999); Has 2124 Blast hits to 2124 proteins in 820 species: Archae - 3; Bacteria - 1583; Metazoa - 2; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 509 (source: NCBI BLink).;Ribonuclease III family protein transcript=eq;prot=eq; + 1 No
AT3G01430 ath BEST Arabidopsis thaliana protein match is: NHL domain-containing protein (TAIR:AT5G14890.1); Has 98 Blast hits to 98 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). transcript=eq;prot=eq; - 3 No
AT3G48020 ath unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G62865.1); Has 82 Blast hits to 82 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 82; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). transcript=eq;prot=eq; + 3 No
AT5G25240 ath unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). transcript=eq;prot=eq; - 5 No
AT5G62865 ath unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48020.1). transcript=eq;prot=eq; + 5 No
BD1G01120 bdi ribonuclease III activity (Blast2GO) pid=Bradi1g01120.1;tid=Bradi1g01120.1;GeneName=Bradi1g01120;transcript=eq;prot=eq - Bd1 No
BD1G45000 bdi pid=Bradi1g45000.1;tid=Bradi1g45000.1;GeneName=Bradi1g45000;transcript=eq;prot=eq - Bd1 No
BD3G59530 bdi pid=Bradi3g59530.1;tid=Bradi3g59530.1;GeneName=Bradi3g59530;transcript=eq;prot=eq + Bd3 No
CP00124G00260 cpa name=evm.TU.supercontig_124.26;pid=evm.TU.supercontig_124.26;prot=eq;transcript=eq - supercontig_124 No
CP00124G00280 cpa name=evm.TU.supercontig_124.28;pid=evm.TU.supercontig_124.28;prot=eq;transcript=eq - supercontig_124 No
CP00140G00340 cpa name=evm.TU.supercontig_140.34;pid=evm.TU.supercontig_140.34;prot=eq;transcript=eq + supercontig_140 No
CP00187G00270 cpa name=evm.TU.supercontig_187.27;pid=evm.TU.supercontig_187.27;prot=eq;transcript=eq + supercontig_187 No
FV0G38520 fve 50S ribosomal protein L4, chloroplastic (probable) transcript=eq;prot=eq;pid=gene28384 - scf0513124 No
FV2G30800 fve NGFI-A-binding protein 2 (probable) transcript=eq;prot=eq;pid=gene10995 - LG2 No
FV5G05930 fve Serine/arginine repetitive matrix protein 2 (Ser/Arg-related nuclear matrix protein) (probable) transcript=eq;prot=eq;pid=gene32160 - LG5 No
<< previous
1 | 2 | 3 | 4 | 5 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier