Gene family  

Sub-families
ORTHO003062 (30 genes in 23 species)
ORTHO007852 (22 genes in 15 species)
ORTHO010466 (19 genes in 16 species)
View all sub-families (7)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (5 genes)
ath
Arabidopsis thaliana (6 genes)
bdi
Brachypodium distachyon (3 genes)
cpa
Carica papaya (3 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (3 genes)
gma
Glycine max (8 genes)
lja
Lotus japonicus (5 genes)
mdo
Malus domestica (13 genes)
mes
Manihot esculenta (5 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (3 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (3 genes)
osaindica
Oryza sativa ssp. indica (3 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (3 genes)
ptr
Populus trichocarpa (7 genes)
rco
Ricinus communis (4 genes)
sbi
Sorghum bicolor (6 genes)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (4 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (5 genes)
zma
Zea mays (2 genes)



The gene family HOM001155 has 98 genes in 25 species (14 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 5, showing 20 records out of 98 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G49780 aly name=fgenesh2_kg.1__4531__AT1G55205.1;pid=474577;prot=eq;tid=474577 + scaffold_1 Yes
AL3G14230 aly name=fgenesh2_kg.3__1463__AT3G13674.1;pid=478762;prot=eq;tid=478762 - scaffold_3 Yes
AL3G37190 aly name=scaffold_303950.1;pid=899980;prot=eq;tid=931493 - scaffold_3 No
AL4G17260 aly name=scaffold_401772.1;pid=902271;prot=eq;tid=933784 - scaffold_4 No
AL7G20630 aly name=Al_scaffold_0007_1970;pid=858471;prot=eq;tid=889984 + scaffold_7 No
AT1G55205 ath unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G13674.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). transcript=eq;prot=eq; + 1 Yes
AT2G16650 ath proteinaceous RNase P 2 (PRORP2); FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: nucleus; EXPRESSED IN: male gametophyte, cultured cell; EXPRESSED DURING: M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Ribonuclease Zc3h12a-like (InterPro:IPR021869), Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: proteinaceous RNase P 3 (TAIR:AT4G21900.1); Has 397 Blast hits to 377 proteins in 89 species: Archae - 0; Bacteria - 0; Metazoa - 82; Fungi - 0; Plants - 249; Viruses - 0; Other Eukaryotes - 66 (source: NCBI BLink).;proteinaceous RNase P 2 transcript=eq;prot=eq; - 2 No
AT2G32230 ath RNase P able to cleave tRNA-like structures involved in the maturation of plant mitochondrial mRNAs.;proteinaceous RNase P 1 transcript=eq;prot=eq; - 2 No
AT3G13674 ath unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 11 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G55205.1); Has 76 Blast hits to 76 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 76; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). transcript=eq;prot=eq; - 3 Yes
AT4G21900 ath proteinaceous RNase P 3 (PRORP3); FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: nucleus, membrane; CONTAINS InterPro DOMAIN/s: Ribonuclease Zc3h12a-like (InterPro:IPR021869), Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: proteinaceous RNase P 2 (TAIR:AT2G16650.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;proteinaceous RNase P 3 transcript=eq;prot=eq; - 4 No
AT5G60430 ath drug transmembrane transporters;antiporters; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: proteinaceous RNase P 3 (TAIR:AT4G21900.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;drug transmembrane transporters;antiporters transcript=eq;prot=eq; + 5 No
BD2G61870 bdi antiporter activity (Blast2GO) pid=Bradi2g61870.1;tid=Bradi2g61870.1;GeneName=Bradi2g61870;transcript=eq;prot=eq - Bd2 No
BD3G10160 bdi antiporter activity (Blast2GO) pid=Bradi3g10160.1;tid=Bradi3g10160.1;GeneName=Bradi3g10160;transcript=eq;prot=eq - Bd3 No
BD5G27596 bdi pid=Bradi5g27596.1;tid=Bradi5g27596.1;GeneName=Bradi5g27596;transcript=eq;prot=eq + Bd5 No
CP00023G00720 cpa name=evm.TU.supercontig_23.72;pid=evm.TU.supercontig_23.72;prot=eq;transcript=eq + supercontig_23 No
CP00032G01020 cpa name=evm.TU.supercontig_32.102;pid=evm.TU.supercontig_32.102;prot=eq;transcript=eq + supercontig_32 No
CP00036G00230 cpa name=evm.TU.supercontig_36.23;pid=evm.TU.supercontig_36.23;prot=eq;transcript=eq - supercontig_36 No
CR13G00380 cre name=Chlre2_kg.scaffold_2000035;pid=143307;prot=eq;tid=143307;transcript=eq - chromosome_13 No
FV0G04020 fve Pentatricopeptide repeat-containing protein At2g32230, mitochondrial, Precursor (similar to) transcript=eq;prot=eq;pid=gene04597 - scf0513158 No
FV1G06730 fve Pentatricopeptide repeat-containing protein At2g32230, mitochondrial, Precursor (probable) transcript=eq;prot=eq;pid=gene30924 + LG1 No
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