Gene family  

Sub-families
ORTHO001040 (43 genes in 24 species)
ORTHO010069 (19 genes in 16 species)
ORTHO020258 (6 genes in 4 species)
View all sub-families (9)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (3 genes)
ath
Arabidopsis thaliana (3 genes)
bdi
Brachypodium distachyon (4 genes)
cpa
Carica papaya (3 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (4 genes)
gma
Glycine max (9 genes)
lja
Lotus japonicus (2 genes)
mdo
Malus domestica (11 genes)
mes
Manihot esculenta (8 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (6 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (4 genes)
osaindica
Oryza sativa ssp. indica (4 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (1 gene)
ptr
Populus trichocarpa (8 genes)
rco
Ricinus communis (4 genes)
sbi
Sorghum bicolor (4 genes)
tca
Theobroma cacao (5 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (4 genes)
zma
Zea mays (7 genes)



The gene family HOM001153 has 99 genes in 24 species (3 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 5, showing 20 records out of 99 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL4G12040 aly name=fgenesh2_kg.4__765__AT2G28060.1;pid=481705;prot=eq;tid=481705 + scaffold_4 No
AL6G21430 aly name=fgenesh2_kg.6__2162__AT5G21170.2;pid=489028;prot=eq;tid=489028 + scaffold_6 No
AL7G26940 aly name=scaffold_702863.1;pid=915121;prot=eq;tid=946634 - scaffold_7 No
AT2G28060 ath 5'-AMP-activated protein kinase beta-2 subunit protein; CONTAINS InterPro DOMAIN/s: 5-AMP-activated protein kinase, beta subunit, interaction domain (InterPro:IPR006828); BEST Arabidopsis thaliana protein match is: 5'-AMP-activated protein kinase beta-2 subunit protein (TAIR:AT5G21170.2); Has 379 Blast hits to 379 proteins in 106 species: Archae - 0; Bacteria - 0; Metazoa - 199; Fungi - 21; Plants - 141; Viruses - 0; Other Eukaryotes - 18 (source: NCBI BLink).;5'-AMP-activated protein kinase beta-2 subunit protein transcript=eq;prot=eq; - 2 No
AT4G16360 ath 5'-AMP-activated protein kinase beta-2 subunit protein; FUNCTIONS IN: AMP-activated protein kinase activity; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 5-AMP-activated protein kinase, beta subunit, interaction domain (InterPro:IPR006828); BEST Arabidopsis thaliana protein match is: 5'-AMP-activated protein kinase beta-2 subunit protein (TAIR:AT5G21170.1).;5'-AMP-activated protein kinase beta-2 subunit protein transcript=eq;prot=eq; + 4 No
AT5G21170 ath Encodes AKINbeta1, a subunit of the SnRK1 kinase (Sucrose non-fermenting-1-related protein kinase). Involved in regulation of nitrogen and sugar metabolism.;5'-AMP-activated protein kinase beta-2 subunit protein transcript=eq;prot=eq; + 5 No
BD1G17230 bdi protein kinase binding (Blast2GO) pid=Bradi1g17230.1;tid=Bradi1g17230.1;GeneName=Bradi1g17230;transcript=eq;prot=eq + Bd1 No
BD1G64040 bdi AMP-activated protein kinase activity (Blast2GO) pid=Bradi1g64040.1;tid=Bradi1g64040.1;GeneName=Bradi1g64040;transcript=eq;prot=eq - Bd1 No
BD2G01490 bdi AMP-activated protein kinase activity (Blast2GO) pid=Bradi2g01490.3;tid=Bradi2g01490.3;GeneName=Bradi2g01490;transcript=eq;prot=eq + Bd2 No
BD2G21420 bdi AMP-activated protein kinase activity (Blast2GO) pid=Bradi2g21420.1;tid=Bradi2g21420.1;GeneName=Bradi2g21420;transcript=eq;prot=eq + Bd2 No
CP00027G02420 cpa name=evm.TU.supercontig_27.243;pid=evm.TU.supercontig_27.243;prot=eq;transcript=eq + supercontig_27 No
CP00034G02150 cpa name=evm.TU.supercontig_34.216;pid=evm.TU.supercontig_34.216;prot=eq;transcript=eq - supercontig_34 No
CP00136G00280 cpa name=evm.TU.supercontig_136.28;pid=evm.TU.supercontig_136.28;prot=eq;transcript=eq - supercontig_136 No
CR10G08660 cre name=pasa_Sanger_mRNA4228;pid=421129;prot=eq;tid=394451;transcript=eq + chromosome_10 No
FV1G22340 fve SNF1-related protein kinase regulatory subunit beta-1 (AKIN beta-1) (similar to) transcript=eq;prot=eq;pid=gene25457 - LG1 No
FV2G24070 fve SNF1-related protein kinase regulatory subunit beta-2 (AKIN beta-2) (similar to) transcript=eq;prot=eq;pid=gene20213 + LG2 No
FV3G02870 fve SNF1-related protein kinase regulatory subunit beta-2 (AKIN beta-2) (similar to) transcript=eq;prot=eq;pid=gene19832 - LG3 No
FV6G32670 fve SNF1-related protein kinase regulatory subunit beta-2 (AKIN beta-2) (probable) transcript=eq;prot=eq;pid=gene15521 - LG6 No
GM02G44340 gma 02 pid=16250135;transcript=eq;prot=eq;name=Glyma02g44340.1 + Gm02 No
GM02G47890 gma 02 pid=16250568;transcript=eq;prot=eq;name=Glyma02g47890.1 + Gm02 No
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