Gene family  

Sub-families
ORTHO003273 (29 genes in 18 species)
ORTHO003317 (29 genes in 18 species)
ORTHO010864 (18 genes in 17 species)
View all sub-families (8)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (4 genes)
ath
Arabidopsis thaliana (4 genes)
bdi
Brachypodium distachyon (4 genes)
cpa
Carica papaya (5 genes)
fve
Fragaria vesca (4 genes)
gma
Glycine max (7 genes)
lja
Lotus japonicus (3 genes)
mdo
Malus domestica (6 genes)
mes
Manihot esculenta (6 genes)
mtr
Medicago truncatula (2 genes)
osa
Oryza sativa ssp. japonica (6 genes)
osaindica
Oryza sativa ssp. indica (6 genes)
ppa
Physcomitrella patens (11 genes)
ptr
Populus trichocarpa (6 genes)
rco
Ricinus communis (5 genes)
sbi
Sorghum bicolor (5 genes)
smo
Selaginella moellendorffii (3 genes)
tca
Theobroma cacao (4 genes)
vvi
Vitis vinifera (4 genes)
zma
Zea mays (5 genes)



The gene family HOM001137 has 100 genes in 20 species (4 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 5, showing 20 records out of 100 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G03970 aly name=fgenesh2_kg.1__392__AT1G04560.1;pid=470438;prot=eq;tid=470438 + scaffold_1 No
AL1G30450 aly name=fgenesh2_kg.1__3114__AT1G29520.1;pid=473160;prot=eq;tid=473160 + scaffold_1 No
AL6G19100 aly name=fgenesh2_kg.6__1915__AT5G18970.1;pid=488781;prot=eq;tid=488781 - scaffold_6 No
AL8G01710 aly name=fgenesh1_pm.C_scaffold_8000115;pid=330772;prot=eq;tid=330772 - scaffold_8 No
AT1G04560 ath AWPM-19-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: AWPM-19-like (InterPro:IPR008390); BEST Arabidopsis thaliana protein match is: AWPM-19-like family protein (TAIR:AT5G46530.1); Has 177 Blast hits to 177 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 177; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;AWPM-19-like family protein transcript=eq;prot=eq; + 1 No
AT1G29520 ath AWPM-19-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AWPM-19-like (InterPro:IPR008390); BEST Arabidopsis thaliana protein match is: AWPM-19-like family protein (TAIR:AT5G46530.1); Has 177 Blast hits to 177 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 177; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;AWPM-19-like family protein transcript=eq;prot=eq; + 1 No
AT5G18970 ath AWPM-19-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: AWPM-19-like (InterPro:IPR008390); BEST Arabidopsis thaliana protein match is: AWPM-19-like family protein (TAIR:AT5G46530.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;AWPM-19-like family protein transcript=eq;prot=eq; - 5 No
AT5G46530 ath AWPM-19-like family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: AWPM-19-like (InterPro:IPR008390); BEST Arabidopsis thaliana protein match is: AWPM-19-like family protein (TAIR:AT1G29520.1); Has 181 Blast hits to 181 proteins in 20 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 181; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;AWPM-19-like family protein transcript=eq;prot=eq; + 5 No
BD1G00600 bdi pid=Bradi1g00600.1;tid=Bradi1g00600.1;GeneName=Bradi1g00600;transcript=eq;prot=eq - Bd1 No
BD2G08680 bdi pid=Bradi2g08680.1;tid=Bradi2g08680.1;GeneName=Bradi2g08680;transcript=eq;prot=eq - Bd2 No
BD2G25960 bdi pid=Bradi2g25960.1;tid=Bradi2g25960.1;GeneName=Bradi2g25960;transcript=eq;prot=eq - Bd2 No
BD2G47520 bdi pid=Bradi2g47520.1;tid=Bradi2g47520.1;GeneName=Bradi2g47520;transcript=eq;prot=eq + Bd2 No
CP00016G00490 cpa name=evm.TU.supercontig_16.49;pid=evm.TU.supercontig_16.49;prot=eq;transcript=eq + supercontig_16 No
CP00017G01540 cpa name=evm.TU.supercontig_17.154;pid=evm.TU.supercontig_17.154;prot=eq;transcript=eq + supercontig_17 No
CP00059G00230 cpa name=evm.TU.supercontig_59.23;pid=evm.TU.supercontig_59.23;prot=eq;transcript=eq + supercontig_59 No
CP00179G00140 cpa name=evm.TU.supercontig_179.15;pid=evm.TU.supercontig_179.15;prot=eq;transcript=eq + supercontig_179 No
CP00179G00180 cpa name=evm.TU.supercontig_179.19;pid=evm.TU.supercontig_179.19;prot=eq;transcript=eq - supercontig_179 No
FV0G37570 fve NADH-ubiquinone oxidoreductase chain 2 (probable) transcript=eq;prot=eq;pid=gene28290 + scf0513124 No
FV3G08650 fve Antigen LPMC-61 (probable) transcript=eq;prot=eq;pid=gene24880 - LG3 No
FV4G15900 fve Endoglucanase 1 (probable) transcript=eq;prot=eq;pid=gene06120 + LG4 No
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