Gene family  

Sub-families
ORTHO000786 (47 genes in 25 species)
ORTHO006042 (25 genes in 24 species)
ORTHO026979 (4 genes in 4 species)
View all sub-families (7)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (4 genes)
ath
Arabidopsis thaliana (4 genes)
bdi
Brachypodium distachyon (3 genes)
cpa
Carica papaya (4 genes)
cre
Chlamydomonas reinhardtii (2 genes)
fve
Fragaria vesca (4 genes)
gma
Glycine max (6 genes)
lja
Lotus japonicus (4 genes)
mdo
Malus domestica (10 genes)
mes
Manihot esculenta (7 genes)
mrcc299
Micromonas sp. RCC299 (2 genes)
mtr
Medicago truncatula (4 genes)
olu
Ostreococcus lucimarinus (2 genes)
osa
Oryza sativa ssp. japonica (3 genes)
osaindica
Oryza sativa ssp. indica (3 genes)
ota
Ostreococcus tauri (2 genes)
ppa
Physcomitrella patens (6 genes)
ptr
Populus trichocarpa (8 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (3 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (5 genes)
vca
Volvox carteri (2 genes)
vvi
Vitis vinifera (3 genes)
zma
Zea mays (6 genes)



The gene family HOM001123 has 101 genes in 25 species (7 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 6, showing 20 records out of 101 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL2G19810 aly name=scaffold_202016.1;pid=894942;prot=eq;tid=926455 + scaffold_2 No
AL3G04520 aly name=scaffold_300496.1;pid=896526;prot=eq;tid=928039 + scaffold_3 No
AL5G00240 aly name=fgenesh2_kg.5__34__AT2G01290.1;pid=484042;prot=eq;tid=484042 - scaffold_5 No
AL8G05170 aly name=Al_scaffold_0008_506;pid=884242;prot=eq;tid=915755 + scaffold_8 No
AT1G71100 ath Encodes a ribose 5-phosphate isomerase involved in the formation of uridine used for the synthesis of UDP-sugars. Mutants of this gene are affected in cellulose biosynthesis.;Ribose 5-phosphate isomerase, type A protein transcript=eq;prot=eq; + 1 No
AT2G01290 ath Cytosolic ribose-5-phosphate isomerase. Knockout mutation causes chloroplast dysfunction, late flowering and premature cell death.;ribose-5-phosphate isomerase 2 transcript=eq;prot=eq; - 2 No
AT3G04790 ath Ribose 5-phosphate isomerase, type A protein; FUNCTIONS IN: ribose-5-phosphate isomerase activity; INVOLVED IN: defense response to bacterium, reductive pentose-phosphate cycle; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribose 5-phosphate isomerase, type A (InterPro:IPR004788); BEST Arabidopsis thaliana protein match is: ribose-5-phosphate isomerase 2 (TAIR:AT2G01290.1); Has 5044 Blast hits to 5043 proteins in 1956 species: Archae - 235; Bacteria - 3572; Metazoa - 110; Fungi - 145; Plants - 141; Viruses - 0; Other Eukaryotes - 841 (source: NCBI BLink).;Ribose 5-phosphate isomerase, type A protein transcript=eq;prot=eq; + 3 No
AT5G44520 ath NagB/RpiA/CoA transferase-like superfamily protein; FUNCTIONS IN: ribose-5-phosphate isomerase activity; INVOLVED IN: glucose catabolic process to lactate and acetate, 5-phosphoribose 1-diphosphate biosynthetic process, reductive pentose-phosphate cycle, D-ribose catabolic process, pentose-phosphate shunt, non-oxidative branch; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribose 5-phosphate isomerase, type A (InterPro:IPR004788); BEST Arabidopsis thaliana protein match is: Ribose 5-phosphate isomerase, type A protein (TAIR:AT3G04790.1); Has 2560 Blast hits to 2560 proteins in 1021 species: Archae - 184; Bacteria - 1763; Metazoa - 86; Fungi - 39; Plants - 144; Viruses - 0; Other Eukaryotes - 344 (source: NCBI BLink).;NagB/RpiA/CoA transferase-like superfamily protein transcript=eq;prot=eq; - 5 No
BD1G06750 bdi ribose-5-phosphate isomerase activity (Blast2GO) pid=Bradi1g06750.1;tid=Bradi1g06750.1;GeneName=Bradi1g06750;transcript=eq;prot=eq + Bd1 No
BD1G55740 bdi ribose-5-phosphate isomerase activity (Blast2GO) pid=Bradi1g55740.1;tid=Bradi1g55740.1;GeneName=Bradi1g55740;transcript=eq;prot=eq - Bd1 No
BD5G05070 bdi ribose-5-phosphate isomerase activity (Blast2GO) pid=Bradi5g05070.1;tid=Bradi5g05070.1;GeneName=Bradi5g05070;transcript=eq;prot=eq - Bd5 No
CP00065G01130 cpa name=evm.TU.supercontig_65.113;pid=evm.TU.supercontig_65.113;prot=eq;transcript=eq - supercontig_65 No
CP00117G00800 cpa name=evm.TU.supercontig_117.80;pid=evm.TU.supercontig_117.80;prot=eq;transcript=eq - supercontig_117 No
CP00285G00010 cpa name=evm.TU.supercontig_285.1;pid=evm.TU.supercontig_285.1;prot=eq;transcript=eq + supercontig_285 No
CP33583G00010 cpa name=evm.TU.contig_33583.1;pid=evm.TU.contig_33583.1;prot=eq;warning=only partially equal protein - contig_33583 Yes
CR03G08130 cre name=estExt_GenewiseH_1.C_140147;pid=55838;prot=eq;tid=55838;transcript=eq - chromosome_3 No
CR07G00430 cre name=SKA_Chlre2_kg.scaffold_6000171;pid=205912;prot=eq;tid=205917;transcript=eq + chromosome_7 No
FV0G06330 fve Probable ribose-5-phosphate isomerase (similar to) transcript=eq;prot=eq;pid=gene04042 - scf0513158 No
FV0G22290 fve Probable ribose-5-phosphate isomerase (similar to) transcript=eq;prot=eq;pid=gene16258 - scf0513168 No
FV0G25290 fve Probable ribose-5-phosphate isomerase (similar to) transcript=eq;prot=eq;pid=gene16545 - scf0513168 No
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