Gene family  

Sub-families
ORTHO000676 (50 genes in 24 species)
ORTHO010186 (19 genes in 18 species)
ORTHO028499 (4 genes in 1 species)
View all sub-families (4)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (4 genes)
ath
Arabidopsis thaliana (4 genes)
bdi
Brachypodium distachyon (3 genes)
cpa
Carica papaya (3 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (3 genes)
gma
Glycine max (6 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (28 genes)
mes
Manihot esculenta (3 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (5 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (3 genes)
osaindica
Oryza sativa ssp. indica (5 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (5 genes)
rco
Ricinus communis (4 genes)
sbi
Sorghum bicolor (3 genes)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (3 genes)
vca
Volvox carteri (2 genes)
vvi
Vitis vinifera (3 genes)
zma
Zea mays (5 genes)



The gene family HOM001117 has 101 genes in 25 species (2 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 6, showing 20 records out of 101 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL4G14250 aly name=fgenesh2_kg.4__945__AT2G29690.1;pid=481885;prot=eq;tid=481885 + scaffold_4 No
AL5G26080 aly name=fgenesh1_pg.C_scaffold_5002065;pid=348673;prot=eq;tid=348673 + scaffold_5 No
AL6G05340 aly name=fgenesh2_kg.6__508__AT5G05730.1;pid=487374;prot=eq;tid=487374 - scaffold_6 No
AL6G05350 aly name=fgenesh2_kg.6__509__AT5G05740.1;pid=487375;prot=eq;tid=487375 - scaffold_6 No
AT2G29690 ath Encode a functional anthranilate synthase protein. Expressed at a constitutive basal level. Expression was not induced by wounding nor bacterial pathogen infiltration. Involved in aromatic amino acid biosynthesis.;anthranilate synthase 2 transcript=eq;prot=eq; + 2 No
AT3G55870 ath ADC synthase superfamily protein; FUNCTIONS IN: oxo-acid-lyase activity, anthranilate synthase activity; INVOLVED IN: tryptophan biosynthetic process, biosynthetic process; LOCATED IN: endomembrane system; EXPRESSED IN: sepal, male gametophyte, flower, carpel, cultured cell; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Anthranilate synthase component I, N-terminal (InterPro:IPR006805), Chorismate binding, C-terminal (InterPro:IPR015890), ADC synthase (InterPro:IPR005801), Anthranilate synthase component I (InterPro:IPR019999), Anthranilate synthase component I, PabB-like (InterPro:IPR005256); BEST Arabidopsis thaliana protein match is: anthranilate synthase alpha subunit 1 (TAIR:AT5G05730.1); Has 15837 Blast hits to 15836 proteins in 2536 species: Archae - 246; Bacteria - 10713; Metazoa - 5; Fungi - 310; Plants - 185; Viruses - 0; Other Eukaryotes - 4378 (source: NCBI BLink).;ADC synthase superfamily protein transcript=eq;prot=eq; + 3 No
AT5G05730 ath ASA1 encodes the alpha subunit of anthranilate synthase, which catalyzes the rate-limiting step of tryptophan synthesis. ASA1 is induced by ethylene, and forms a link between ethylene signalling and auxin synthesis in roots.;anthranilate synthase alpha subunit 1 transcript=eq;prot=eq; - 5 No
AT5G05740 ath S2P-like putative metalloprotease, also contain transmembrane helices near their C-termini and many of them, five of seven, contain a conserved zinc-binding motif HEXXH. Homolog of EGY1. Each of the EGY1 and EGY-like proteins share two additional highly conserved motifs, the previously reported NPDG motif (aa 442–454 in EGY1, Rudner et al., 1999) and a newly defined GNLR motif (aa 171–179 in EGY1). The GNLR motif is a novel signature motif unique to EGY1 and EGY-like proteins as well as other EGY1 orthologs found in cyanobacteria.;ethylene-dependent gravitropism-deficient and yellow-green-like 2 transcript=eq;prot=eq; - 5 No
BD1G03260 bdi anthranilate synthase activity (Blast2GO) pid=Bradi1g03260.1;tid=Bradi1g03260.1;GeneName=Bradi1g03260;transcript=eq;prot=eq + Bd1 No
BD1G67240 bdi anthranilate synthase activity (Blast2GO) pid=Bradi1g67240.1;tid=Bradi1g67240.1;GeneName=Bradi1g67240;transcript=eq;prot=eq + Bd1 No
BD2G02770 bdi metalloendopeptidase activity (Blast2GO) pid=Bradi2g02770.1;tid=Bradi2g02770.1;GeneName=Bradi2g02770;transcript=eq;prot=eq - Bd2 No
CP00019G01920 cpa name=evm.TU.supercontig_19.193;pid=evm.TU.supercontig_19.193;prot=eq;transcript=eq - supercontig_19 No
CP00019G01930 cpa name=evm.TU.supercontig_19.194;pid=evm.TU.supercontig_19.194;prot=eq;transcript=eq - supercontig_19 No
CP00112G00390 cpa name=evm.TU.supercontig_112.39;pid=evm.TU.supercontig_112.39;prot=eq;transcript=eq - supercontig_112 No
CR01G10260 cre name=Chlre2_kg.scaffold_1000699;pid=146875;prot=eq;tid=146875;transcript=eq - chromosome_1 No
FV3G32480 fve Anthranilate synthase component I-1, chloroplastic, Precursor (similar to) transcript=eq;prot=eq;pid=gene28214 + LG3 No
FV3G32490 fve Anthranilate synthase component I-1, chloroplastic, Precursor (similar to) transcript=eq;prot=eq;pid=gene28215 + LG3 Yes
FV7G29150 fve Anthranilate synthase component I-1, chloroplastic, Precursor (similar to) transcript=eq;prot=eq;pid=gene20939 + LG7 No
GM02G42300 gma 02 pid=16249896;transcript=eq;prot=eq;name=Glyma02g42300.1 + Gm02 No
GM10G43210 gma 10 pid=16281964;transcript=eq;prot=eq;name=Glyma10g43210.1 - Gm10 No
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