Gene family 
- Id
- HOM001113
- Method
- BLASTP E_value=1e-05 MCL_I=2
- Sequences
- Sub-families
-
ORTHO001782 (35 genes in 19 species)
ORTHO001787 (35 genes in 24 species)
ORTHO010294 (19 genes in 17 species)
View all sub-families (4)
- Keywords
-
Overview of gene family content
- aly
- Arabidopsis lyrata (5 genes)
- ath
- Arabidopsis thaliana (5 genes)
- bdi
- Brachypodium distachyon (4 genes)
- cpa
- Carica papaya (3 genes)
- cre
- Chlamydomonas reinhardtii (1 gene)
- fve
- Fragaria vesca (3 genes)
- gma
- Glycine max (6 genes)
- lja
- Lotus japonicus (3 genes)
- mdo
- Malus domestica (7 genes)
- mes
- Manihot esculenta (6 genes)
- mrcc299
- Micromonas sp. RCC299 (1 gene)
- mtr
- Medicago truncatula (2 genes)
- olu
- Ostreococcus lucimarinus (1 gene)
- osa
- Oryza sativa ssp. japonica (6 genes)
- osaindica
- Oryza sativa ssp. indica (5 genes)
- ota
- Ostreococcus tauri (1 gene)
- ppa
- Physcomitrella patens (5 genes)
- ptr
- Populus trichocarpa (5 genes)
- rco
- Ricinus communis (4 genes)
- sbi
- Sorghum bicolor (5 genes)
- smo
- Selaginella moellendorffii (4 genes)
- tca
- Theobroma cacao (3 genes)
- vca
- Volvox carteri (1 gene)
- vvi
- Vitis vinifera (4 genes)
- zma
- Zea mays (11 genes)
The gene family HOM001113 has 101 genes in 25 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:
- gene family : HOM001113
Page 1 of 6, showing 20 records out of 101 total, starting on record 1, ending on 20
| gene_id | species | description | comment | strand | chr | outlier |
|---|---|---|---|---|---|---|
| AL1G21080 | aly | name=fgenesh2_kg.1__2182__AT1G20020.3;pid=472228;prot=eq;tid=472228 | + | scaffold_1 | No | |
| AL1G31640 | aly | name=scaffold_103394.1;pid=890600;prot=eq;tid=922113 | - | scaffold_1 | No | |
| AL6G37340 | aly | name=fgenesh1_pm.C_scaffold_6002674;pid=327454;prot=eq;tid=327454 | - | scaffold_6 | No | |
| AL7G17990 | aly | name=fgenesh2_kg.7__1877__AT4G24175.1;pid=492444;prot=eq;tid=492444 | - | scaffold_7 | No | |
| AL8G34490 | aly | name=fgenesh2_kg.8__2809__AT5G66190.1;pid=496993;prot=eq;tid=496993 | + | scaffold_8 | No | |
| AT1G20020 | ath | Encodes a leaf-type ferredoxin:NADP(H) oxidoreductase. It is present in both chloroplast stroma and thylakoid membranes but is more abundant in the stroma;ferredoxin-NADP(+)-oxidoreductase 2 | transcript=eq;prot=eq; | + | 1 | No |
| AT1G30510 | ath | Encodes a root-type ferredoxin:NADP(H) oxidoreductase.;root FNR 2 | transcript=eq;prot=eq; | - | 1 | No |
| AT4G05390 | ath | Encodes a root-type ferredoxin:NADP(H) oxidoreductase.;root FNR 1 | transcript=eq;prot=eq; | - | 4 | No |
| AT4G24175 | ath | unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0307 (InterPro:IPR006839); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | transcript=eq;prot=eq; | + | 4 | No |
| AT5G66190 | ath | Encodes a leaf-type ferredoxin:NADP(H) oxidoreductase. It is present in both chloroplast stroma and thylakoid membranes but is more abundant in the thylakoid. The affinity of this enzyme for ferredoxin is slightly, but significantly, higher than AtLFNR2, an isoform of the same enzyme. AtLFNR1 forms a heterodimer with AtFNR2 and is also a prerequisite to attach AtFNR2 to the thylakoid membrane.;ferredoxin-NADP(+)-oxidoreductase 1 | transcript=eq;prot=eq; | - | 5 | No |
| BD1G06540 | bdi | ferredoxin-NADP+ reductase activity (Blast2GO) | pid=Bradi1g06540.1;tid=Bradi1g06540.1;GeneName=Bradi1g06540;transcript=eq;prot=eq | + | Bd1 | No |
| BD1G52020 | bdi | ferredoxin-NADP+ reductase activity (Blast2GO) | pid=Bradi1g52020.1;tid=Bradi1g52020.1;GeneName=Bradi1g52020;transcript=eq;prot=eq | + | Bd1 | No |
| BD3G00660 | bdi | ferredoxin-NADP+ reductase activity (Blast2GO) | pid=Bradi3g00660.1;tid=Bradi3g00660.1;GeneName=Bradi3g00660;transcript=eq;prot=eq | + | Bd3 | No |
| BD5G04600 | bdi | pid=Bradi5g04600.1;tid=Bradi5g04600.1;GeneName=Bradi5g04600;transcript=eq;prot=eq | + | Bd5 | No | |
| CP00006G02540 | cpa | name=evm.TU.supercontig_6.255;pid=evm.TU.supercontig_6.255;prot=eq;transcript=eq | + | supercontig_6 | No | |
| CP00026G00580 | cpa | name=evm.TU.supercontig_26.58;pid=evm.TU.supercontig_26.58;prot=eq;transcript=eq | + | supercontig_26 | No | |
| CP00166G00300 | cpa | name=evm.TU.supercontig_166.30;pid=evm.TU.supercontig_166.30;prot=eq;transcript=eq | + | supercontig_166 | No | |
| CR11G02050 | cre | name=OVA_estExt_fgenesh2_kg.C_330003;pid=195553;prot=eq;tid=195553;transcript=eq | - | chromosome_11 | No | |
| FV1G13600 | fve | Ferredoxin--NADP reductase, chloroplastic (FNR), Precursor (putative) | transcript=eq;prot=eq;pid=gene14604 | - | LG1 | No |
| FV2G38400 | fve | Chaperone protein dnaJ 11, chloroplastic (AtJ11), Precursor (probable) | transcript=eq;prot=eq;pid=gene08537 | - | LG2 | No |