Gene family  

Sub-families
ORTHO001782 (35 genes in 19 species)
ORTHO001787 (35 genes in 24 species)
ORTHO010294 (19 genes in 17 species)
View all sub-families (4)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (5 genes)
ath
Arabidopsis thaliana (5 genes)
bdi
Brachypodium distachyon (4 genes)
cpa
Carica papaya (3 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (3 genes)
gma
Glycine max (6 genes)
lja
Lotus japonicus (3 genes)
mdo
Malus domestica (7 genes)
mes
Manihot esculenta (6 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (2 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (6 genes)
osaindica
Oryza sativa ssp. indica (5 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (5 genes)
ptr
Populus trichocarpa (5 genes)
rco
Ricinus communis (4 genes)
sbi
Sorghum bicolor (5 genes)
smo
Selaginella moellendorffii (4 genes)
tca
Theobroma cacao (3 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (4 genes)
zma
Zea mays (11 genes)



The gene family HOM001113 has 101 genes in 25 species (0 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 6, showing 20 records out of 101 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G21080 aly name=fgenesh2_kg.1__2182__AT1G20020.3;pid=472228;prot=eq;tid=472228 + scaffold_1 No
AL1G31640 aly name=scaffold_103394.1;pid=890600;prot=eq;tid=922113 - scaffold_1 No
AL6G37340 aly name=fgenesh1_pm.C_scaffold_6002674;pid=327454;prot=eq;tid=327454 - scaffold_6 No
AL7G17990 aly name=fgenesh2_kg.7__1877__AT4G24175.1;pid=492444;prot=eq;tid=492444 - scaffold_7 No
AL8G34490 aly name=fgenesh2_kg.8__2809__AT5G66190.1;pid=496993;prot=eq;tid=496993 + scaffold_8 No
AT1G20020 ath Encodes a leaf-type ferredoxin:NADP(H) oxidoreductase. It is present in both chloroplast stroma and thylakoid membranes but is more abundant in the stroma;ferredoxin-NADP(+)-oxidoreductase 2 transcript=eq;prot=eq; + 1 No
AT1G30510 ath Encodes a root-type ferredoxin:NADP(H) oxidoreductase.;root FNR 2 transcript=eq;prot=eq; - 1 No
AT4G05390 ath Encodes a root-type ferredoxin:NADP(H) oxidoreductase.;root FNR 1 transcript=eq;prot=eq; - 4 No
AT4G24175 ath unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0307 (InterPro:IPR006839); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). transcript=eq;prot=eq; + 4 No
AT5G66190 ath Encodes a leaf-type ferredoxin:NADP(H) oxidoreductase. It is present in both chloroplast stroma and thylakoid membranes but is more abundant in the thylakoid. The affinity of this enzyme for ferredoxin is slightly, but significantly, higher than AtLFNR2, an isoform of the same enzyme. AtLFNR1 forms a heterodimer with AtFNR2 and is also a prerequisite to attach AtFNR2 to the thylakoid membrane.;ferredoxin-NADP(+)-oxidoreductase 1 transcript=eq;prot=eq; - 5 No
BD1G06540 bdi ferredoxin-NADP+ reductase activity (Blast2GO) pid=Bradi1g06540.1;tid=Bradi1g06540.1;GeneName=Bradi1g06540;transcript=eq;prot=eq + Bd1 No
BD1G52020 bdi ferredoxin-NADP+ reductase activity (Blast2GO) pid=Bradi1g52020.1;tid=Bradi1g52020.1;GeneName=Bradi1g52020;transcript=eq;prot=eq + Bd1 No
BD3G00660 bdi ferredoxin-NADP+ reductase activity (Blast2GO) pid=Bradi3g00660.1;tid=Bradi3g00660.1;GeneName=Bradi3g00660;transcript=eq;prot=eq + Bd3 No
BD5G04600 bdi pid=Bradi5g04600.1;tid=Bradi5g04600.1;GeneName=Bradi5g04600;transcript=eq;prot=eq + Bd5 No
CP00006G02540 cpa name=evm.TU.supercontig_6.255;pid=evm.TU.supercontig_6.255;prot=eq;transcript=eq + supercontig_6 No
CP00026G00580 cpa name=evm.TU.supercontig_26.58;pid=evm.TU.supercontig_26.58;prot=eq;transcript=eq + supercontig_26 No
CP00166G00300 cpa name=evm.TU.supercontig_166.30;pid=evm.TU.supercontig_166.30;prot=eq;transcript=eq + supercontig_166 No
CR11G02050 cre name=OVA_estExt_fgenesh2_kg.C_330003;pid=195553;prot=eq;tid=195553;transcript=eq - chromosome_11 No
FV1G13600 fve Ferredoxin--NADP reductase, chloroplastic (FNR), Precursor (putative) transcript=eq;prot=eq;pid=gene14604 - LG1 No
FV2G38400 fve Chaperone protein dnaJ 11, chloroplastic (AtJ11), Precursor (probable) transcript=eq;prot=eq;pid=gene08537 - LG2 No
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