Gene family  

Sub-families
ORTHO001655 (36 genes in 21 species)
ORTHO010729 (18 genes in 15 species)
ORTHO011344 (17 genes in 15 species)
View all sub-families (9)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (4 genes)
ath
Arabidopsis thaliana (4 genes)
bdi
Brachypodium distachyon (4 genes)
cpa
Carica papaya (5 genes)
fve
Fragaria vesca (4 genes)
gma
Glycine max (8 genes)
lja
Lotus japonicus (1 gene)
mdo
Malus domestica (10 genes)
mes
Manihot esculenta (8 genes)
mtr
Medicago truncatula (4 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (4 genes)
osaindica
Oryza sativa ssp. indica (5 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (5 genes)
ptr
Populus trichocarpa (9 genes)
rco
Ricinus communis (5 genes)
sbi
Sorghum bicolor (3 genes)
tca
Theobroma cacao (5 genes)
vvi
Vitis vinifera (5 genes)
zma
Zea mays (7 genes)



The gene family HOM001107 has 102 genes in 21 species (3 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 6, showing 20 records out of 102 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G33710 aly name=fgenesh2_kg.1__3382__AT1G32400.1;pid=473428;prot=eq;tid=473428 - scaffold_1 No
AL3G35760 aly name=fgenesh2_kg.3__3148__AT2G20230.1;pid=480447;prot=eq;tid=480447 - scaffold_3 No
AL3G41670 aly name=fgenesh2_kg.3__3610__AT2G20740.1;pid=480909;prot=eq;tid=480909 + scaffold_3 No
AL7G12990 aly name=fgenesh1_pm.C_scaffold_7001046;pid=328819;prot=eq;tid=328819 + scaffold_7 No
AT1G32400 ath TOM2A encodes a 280 amino acid putative four-pass transmembrane protein with a C-terminal farnesylation signal, essential for efficient multiplication of tobacco mosaic viruses.;tobamovirus multiplication 2A transcript=eq;prot=eq; - 1 No
AT2G20230 ath Tetraspanin family protein; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 16 growth stages; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499), Tetraspanin, subgroup (InterPro:IPR000301); BEST Arabidopsis thaliana protein match is: Tetraspanin family protein (TAIR:AT4G28770.2); Has 161 Blast hits to 161 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 160; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).;Tetraspanin family protein transcript=eq;prot=eq; + 2 No
AT2G20740 ath Tetraspanin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499); BEST Arabidopsis thaliana protein match is: Tetraspanin family protein (TAIR:AT2G20230.1); Has 160 Blast hits to 160 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 159; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).;Tetraspanin family protein transcript=eq;prot=eq; + 2 No
AT4G28770 ath Tetraspanin family protein; CONTAINS InterPro DOMAIN/s: Tetraspanin (InterPro:IPR018499); BEST Arabidopsis thaliana protein match is: Tetraspanin family protein (TAIR:AT2G20230.1).;Tetraspanin family protein transcript=eq;prot=eq; - 4 No
BD1G29240 bdi pid=Bradi1g29240.1;tid=Bradi1g29240.1;GeneName=Bradi1g29240;transcript=eq;prot=eq + Bd1 No
BD3G16410 bdi pid=Bradi3g16410.1;tid=Bradi3g16410.1;GeneName=Bradi3g16410;transcript=eq;prot=eq - Bd3 No
BD3G23140 bdi pid=Bradi3g23140.1;tid=Bradi3g23140.1;GeneName=Bradi3g23140;transcript=eq;prot=eq + Bd3 No
BD5G26350 bdi pid=Bradi5g26350.1;tid=Bradi5g26350.1;GeneName=Bradi5g26350;transcript=eq;prot=eq - Bd5 No
CP00006G04170 cpa name=evm.TU.supercontig_6.418;pid=evm.TU.supercontig_6.418;prot=eq;transcript=eq + supercontig_6 No
CP00006G04180 cpa name=evm.TU.supercontig_6.419;pid=evm.TU.supercontig_6.419;prot=eq;transcript=eq + supercontig_6 No
CP00027G00570 cpa name=evm.TU.supercontig_27.58;pid=evm.TU.supercontig_27.58;prot=eq;transcript=eq + supercontig_27 No
CP00034G01400 cpa name=evm.TU.supercontig_34.140;pid=evm.TU.supercontig_34.140;prot=eq;transcript=eq - supercontig_34 No
CP05169G00010 cpa name=evm.TU.supercontig_5169.1;pid=evm.TU.supercontig_5169.1;prot=eq;transcript=eq - supercontig_5169 No
FV2G10860 fve CD82 antigen (probable) transcript=eq;prot=eq;pid=gene08401 - LG2 No
FV3G05940 fve Small conductance calcium-activated potassium channel protein 3 (SK3) (probable) transcript=eq;prot=eq;pid=gene30402 + LG3 No
FV5G30570 fve Solute carrier family 28 member 3 (probable) transcript=eq;prot=eq;pid=gene10760 - LG5 No
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