Gene family  

Sub-families
ORTHO007366 (23 genes in 17 species)
ORTHO013155 (14 genes in 11 species)
ORTHO014657 (11 genes in 10 species)
View all sub-families (14)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (7 genes)
ath
Arabidopsis thaliana (6 genes)
bdi
Brachypodium distachyon (4 genes)
cpa
Carica papaya (3 genes)
fve
Fragaria vesca (7 genes)
gma
Glycine max (7 genes)
lja
Lotus japonicus (5 genes)
mdo
Malus domestica (16 genes)
mes
Manihot esculenta (7 genes)
mtr
Medicago truncatula (2 genes)
osa
Oryza sativa ssp. japonica (6 genes)
osaindica
Oryza sativa ssp. indica (6 genes)
ptr
Populus trichocarpa (6 genes)
rco
Ricinus communis (4 genes)
sbi
Sorghum bicolor (5 genes)
tca
Theobroma cacao (3 genes)
vvi
Vitis vinifera (3 genes)
zma
Zea mays (6 genes)



The gene family HOM001096 has 103 genes in 18 species (2 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 6, showing 20 records out of 103 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL2G26960 aly name=fgenesh2_kg.2__2093__AT1G78040.1;pid=476963;prot=eq;tid=476963 - scaffold_2 No
AL2G27010 aly name=Al_scaffold_0002_2509;pid=877915;prot=eq;tid=909428 + scaffold_2 Yes
AL2G27020 aly name=scaffold_202769.1;pid=895695;prot=eq;tid=927208 + scaffold_2 No
AL6G09830 aly name=fgenesh2_kg.6__973__AT5G10130.1;pid=487839;prot=eq;tid=487839 - scaffold_6 No
AL6G30930 aly name=fgenesh2_kg.6__2901__AT4G08685.1;pid=489767;prot=eq;tid=489767 + scaffold_6 No
AL7G24080 aly name=fgenesh2_kg.7__2432__AT4G18596.1;pid=492999;prot=eq;tid=492999 - scaffold_7 No
AL8G02520 aly name=fgenesh2_kg.8__210__AT5G45880.1;pid=494394;prot=eq;tid=494394 + scaffold_8 No
AT1G29140 ath Pollen Ole e 1 allergen and extensin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen/extensin (InterPro:IPR006041); BEST Arabidopsis thaliana protein match is: Pollen Ole e 1 allergen and extensin family protein (TAIR:AT4G18596.1); Has 312 Blast hits to 312 proteins in 43 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 312; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;Pollen Ole e 1 allergen and extensin family protein transcript=eq;prot=eq; + 1 No
AT1G78040 ath Pollen Ole e 1 allergen and extensin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: in 9 processes; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen/extensin (InterPro:IPR006041), TonB box, conserved site (InterPro:IPR010916); BEST Arabidopsis thaliana protein match is: Pollen Ole e 1 allergen and extensin family protein (TAIR:AT4G08685.1); Has 286 Blast hits to 286 proteins in 40 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 286; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).;Pollen Ole e 1 allergen and extensin family protein transcript=eq;prot=eq; + 1 No
AT4G08685 ath Encodes a protein, expressed in leaves, with similarity to pollen allergens.;Pollen Ole e 1 allergen and extensin family protein transcript=eq;prot=eq; + 4 No
AT4G18596 ath Pollen Ole e 1 allergen and extensin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: extracellular space, endomembrane system; CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen/extensin (InterPro:IPR006041), Allergen Ole e 1, conserved site (InterPro:IPR006040); BEST Arabidopsis thaliana protein match is: Pollen Ole e 1 allergen and extensin family protein (TAIR:AT5G45880.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Pollen Ole e 1 allergen and extensin family protein transcript=eq;prot=eq; + 4 No
AT5G10130 ath Pollen Ole e 1 allergen and extensin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: extracellular space, endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen/extensin (InterPro:IPR006041), Allergen Ole e 1, conserved site (InterPro:IPR006040); BEST Arabidopsis thaliana protein match is: Pollen Ole e 1 allergen and extensin family protein (TAIR:AT4G08685.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).;Pollen Ole e 1 allergen and extensin family protein transcript=eq;prot=eq; - 5 No
AT5G45880 ath Pollen Ole e 1 allergen and extensin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: extracellular space, endomembrane system; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen/extensin (InterPro:IPR006041), Allergen Ole e 1, conserved site (InterPro:IPR006040); BEST Arabidopsis thaliana protein match is: Pollen Ole e 1 allergen and extensin family protein (TAIR:AT4G18596.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).;Pollen Ole e 1 allergen and extensin family protein transcript=eq;prot=eq; - 5 No
BD2G07610 bdi pid=Bradi2g07610.1;tid=Bradi2g07610.1;GeneName=Bradi2g07610;transcript=eq;prot=eq - Bd2 No
BD2G31950 bdi pid=Bradi2g31950.1;tid=Bradi2g31950.1;GeneName=Bradi2g31950;transcript=eq;prot=eq + Bd2 No
BD3G24010 bdi pid=Bradi3g24010.1;tid=Bradi3g24010.1;GeneName=Bradi3g24010;transcript=eq;prot=eq - Bd3 No
BD5G08410 bdi pid=Bradi5g08410.1;tid=Bradi5g08410.1;GeneName=Bradi5g08410;transcript=eq;prot=eq - Bd5 No
CP00007G00660 cpa name=evm.TU.supercontig_7.66;pid=evm.TU.supercontig_7.66;prot=eq;transcript=eq + supercontig_7 No
CP00066G00770 cpa name=evm.TU.supercontig_66.77;pid=evm.TU.supercontig_66.77;prot=eq;transcript=eq - supercontig_66 No
CP00097G00950 cpa name=evm.TU.supercontig_97.95;pid=evm.TU.supercontig_97.95;prot=eq;transcript=eq - supercontig_97 No
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species
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outlier