Gene family  

Sub-families
ORTHO000468 (58 genes in 25 species)
ORTHO021174 (5 genes in 5 species)
ORTHO028332 (4 genes in 4 species)
View all sub-families (4)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (4 genes)
ath
Arabidopsis thaliana (4 genes)
bdi
Brachypodium distachyon (2 genes)
cpa
Carica papaya (2 genes)
cre
Chlamydomonas reinhardtii (1 gene)
fve
Fragaria vesca (4 genes)
gma
Glycine max (8 genes)
lja
Lotus japonicus (4 genes)
mdo
Malus domestica (11 genes)
mes
Manihot esculenta (5 genes)
mrcc299
Micromonas sp. RCC299 (1 gene)
mtr
Medicago truncatula (3 genes)
olu
Ostreococcus lucimarinus (2 genes)
osa
Oryza sativa ssp. japonica (2 genes)
osaindica
Oryza sativa ssp. indica (3 genes)
ota
Ostreococcus tauri (1 gene)
ppa
Physcomitrella patens (4 genes)
ptr
Populus trichocarpa (7 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (3 genes)
smo
Selaginella moellendorffii (2 genes)
tca
Theobroma cacao (7 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (3 genes)
zma
Zea mays (16 genes)



The gene family HOM001095 has 103 genes in 25 species (21 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 6, showing 20 records out of 103 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL4G02910 aly name=fgenesh1_pm.C_scaffold_4000206;pid=320149;prot=eq;tid=320149 - scaffold_4 Yes
AL4G29180 aly name=scaffold_403046.1;pid=903545;prot=eq;tid=935058 - scaffold_4 Yes
AL6G20590 aly name=scaffold_602125.1;pid=910068;prot=eq;tid=941581 - scaffold_6 No
AL8G25150 aly name=fgenesh2_kg.8__1848__AT5G59240.1;pid=496032;prot=eq;tid=496032 + scaffold_8 No
AT2G23240 ath Plant EC metallothionein-like protein, family 15; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Plant EC metallothionein-like protein, family 15 (InterPro:IPR000316); BEST Arabidopsis thaliana protein match is: Plant EC metallothionein-like protein, family 15 (TAIR:AT2G42000.2); Has 284 Blast hits to 225 proteins in 80 species: Archae - 0; Bacteria - 6; Metazoa - 54; Fungi - 2; Plants - 164; Viruses - 0; Other Eukaryotes - 58 (source: NCBI BLink).;Plant EC metallothionein-like protein, family 15 transcript=eq;prot=eq; - 2 Yes
AT2G42000 ath Plant EC metallothionein-like protein, family 15; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; CONTAINS InterPro DOMAIN/s: Plant EC metallothionein-like protein, family 15 (InterPro:IPR000316); BEST Arabidopsis thaliana protein match is: Plant EC metallothionein-like protein, family 15 (TAIR:AT2G23240.2).;Plant EC metallothionein-like protein, family 15 transcript=eq;prot=eq; - 2 Yes
AT5G20290 ath Ribosomal protein S8e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: in 8 components; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S8e (InterPro:IPR001047), Ribosomal protein S8e, conserved site (InterPro:IPR018283), Ribosomal protein S8e/ribosomal biogenesis NSA2= (InterPro:IPR022309); BEST Arabidopsis thaliana protein match is: Ribosomal protein S8e family protein (TAIR:AT5G59240.1); Has 1084 Blast hits to 1080 proteins in 433 species: Archae - 252; Bacteria - 1; Metazoa - 368; Fungi - 161; Plants - 120; Viruses - 0; Other Eukaryotes - 182 (source: NCBI BLink).;Ribosomal protein S8e family protein transcript=eq;prot=eq; - 5 No
AT5G59240 ath Ribosomal protein S8e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Ribosomal protein S8e (InterPro:IPR001047), Ribosomal protein S8e, conserved site (InterPro:IPR018283), Ribosomal protein S8e/ribosomal biogenesis NSA2= (InterPro:IPR022309); BEST Arabidopsis thaliana protein match is: Ribosomal protein S8e family protein (TAIR:AT5G20290.1); Has 1068 Blast hits to 1064 proteins in 429 species: Archae - 247; Bacteria - 0; Metazoa - 364; Fungi - 161; Plants - 120; Viruses - 0; Other Eukaryotes - 176 (source: NCBI BLink).;Ribosomal protein S8e family protein transcript=eq;prot=eq; - 5 No
BD1G51357 bdi pid=Bradi1g51357.1;tid=Bradi1g51357.1;GeneName=Bradi1g51357;transcript=eq;prot=eq - Bd1 No
BD3G43560 bdi pid=Bradi3g43560.1;tid=Bradi3g43560.1;GeneName=Bradi3g43560;transcript=eq;prot=eq + Bd3 No
CP00012G02100 cpa name=evm.TU.supercontig_12.210;pid=evm.TU.supercontig_12.210;prot=eq;transcript=eq + supercontig_12 No
CP00157G00090 cpa name=evm.TU.supercontig_157.9;pid=evm.TU.supercontig_157.9;prot=eq;transcript=eq + supercontig_157 No
CR06G05070 cre name=MAY_chlre3.3.122.1.1;pid=195605;prot=eq;tid=195605;transcript=eq - chromosome_6 No
FV2G12170 fve Class II metallothionein-like protein 1A (similar to) transcript=eq;prot=eq;pid=gene17324 - LG2 Yes
FV2G13780 fve 40S ribosomal protein S8 (similar to) transcript=eq;prot=eq;pid=gene17432 - LG2 No
FV3G26710 fve 40S ribosomal protein S8 (similar to) transcript=eq;prot=eq;pid=gene03523 - LG3 No
FV3G26730 fve 40S ribosomal protein S8 (similar to) transcript=eq;prot=eq;pid=gene03525 - LG3 No
GM03G21710 gma 03 pid=16251999;transcript=eq;prot=eq;name=Glyma03g21710.1 + Gm03 No
GM08G43690 gma 08 pid=16273729;transcript=eq;prot=eq;name=Glyma08g43690.1 - Gm08 No
GM08G46070 gma 08 pid=16273991;transcript=eq;prot=eq;name=Glyma08g46070.1 - Gm08 No
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