Gene family  

Sub-families
ORTHO001774 (35 genes in 25 species)
ORTHO008620 (21 genes in 17 species)
ORTHO013634 (13 genes in 11 species)
View all sub-families (5)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (4 genes)
ath
Arabidopsis thaliana (4 genes)
bdi
Brachypodium distachyon (4 genes)
cpa
Carica papaya (4 genes)
cre
Chlamydomonas reinhardtii (2 genes)
fve
Fragaria vesca (4 genes)
gma
Glycine max (9 genes)
lja
Lotus japonicus (4 genes)
mdo
Malus domestica (9 genes)
mes
Manihot esculenta (4 genes)
mrcc299
Micromonas sp. RCC299 (2 genes)
mtr
Medicago truncatula (7 genes)
olu
Ostreococcus lucimarinus (1 gene)
osa
Oryza sativa ssp. japonica (4 genes)
osaindica
Oryza sativa ssp. indica (3 genes)
ota
Ostreococcus tauri (2 genes)
ppa
Physcomitrella patens (6 genes)
ptr
Populus trichocarpa (6 genes)
rco
Ricinus communis (4 genes)
sbi
Sorghum bicolor (6 genes)
smo
Selaginella moellendorffii (1 gene)
tca
Theobroma cacao (3 genes)
vca
Volvox carteri (1 gene)
vvi
Vitis vinifera (4 genes)
zma
Zea mays (6 genes)



The gene family HOM001089 has 104 genes in 25 species (5 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
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Index of genes with 1 constraints:

Page 1 of 6, showing 20 records out of 104 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G08200 aly name=fgenesh2_kg.1__869__AT1G08540.1;pid=470915;prot=eq;tid=470915 + scaffold_1 No
AL4G22560 aly name=fgenesh2_kg.4__1742__AT2G36990.1;pid=482682;prot=eq;tid=482682 - scaffold_4 No
AL5G23950 aly name=Al_scaffold_0005_2291;pid=866812;prot=eq;tid=898325 - scaffold_5 No
AL6G13430 aly name=scaffold_601382.1;pid=909325;prot=eq;tid=940838 - scaffold_6 No
AT1G08540 ath Enodes a subunit of chloroplast RNA polymerase, confers the ability to recognize promoter sequences on the core enzyme. SIG1 is induced by red and blue light.;RNApolymerase sigma subunit 2 transcript=eq;prot=eq; + 1 No
AT2G36990 ath Encodes a general sigma factor in chloroplasts and is probably responsible for the recognition of sigma 70 type standard bacteria-type multi-subunit RNA polymerase (PEP) promoters in young cotyledons. It is a substrate for regulatory phosphorylation by cpCK2, a nuclear-coded plastid-targeted casein kinase 2, that has been implicated as a key component in plant sigma factor phosphorylation and transcriptional regulation.;RNApolymerase sigma-subunit F transcript=eq;prot=eq; - 2 No
AT3G53920 ath Encodes a sigma-like transcription factor, Sigma 3 (SIG3 or SIGC). As a subunit of chloroplast RNA polymerase, SIG3 confers the ability to recognize promoter sequences on the core enzyme. SIG3 transcribes specifically the psbN gene in plastids.;RNApolymerase sigma-subunit C transcript=eq;prot=eq; - 3 No
AT5G13730 ath Encodes sigma 4 factor, involved in regulating the activity of the plastid-encoded RNA polymerase PEP. Regulates the overall quantity of NDH complexes and thus influences NDH activity.;sigma factor 4 transcript=eq;prot=eq; - 5 No
BD1G00750 bdi pid=Bradi1g00750.1;tid=Bradi1g00750.1;GeneName=Bradi1g00750;transcript=eq;prot=eq + Bd1 No
BD1G66830 bdi pid=Bradi1g66830.1;tid=Bradi1g66830.1;GeneName=Bradi1g66830;transcript=eq;prot=eq - Bd1 No
BD2G14567 bdi pid=Bradi2g14567.1;tid=Bradi2g14567.1;GeneName=Bradi2g14567;transcript=eq;prot=eq - Bd2 No
BD4G19540 bdi protein disulfide oxidoreductase activity (Blast2GO) pid=Bradi4g19540.1;tid=Bradi4g19540.1;GeneName=Bradi4g19540;transcript=eq;prot=eq - Bd4 No
CP00056G00120 cpa name=evm.TU.supercontig_56.12;pid=evm.TU.supercontig_56.12;prot=eq;transcript=eq + supercontig_56 No
CP00073G00280 cpa name=evm.TU.supercontig_73.28;pid=evm.TU.supercontig_73.28;prot=eq;transcript=eq + supercontig_73 No
CP00073G00290 cpa name=evm.TU.supercontig_73.29;pid=evm.TU.supercontig_73.29;prot=eq;transcript=eq + supercontig_73 No
CP00125G00400 cpa name=evm.TU.supercontig_125.40;pid=evm.TU.supercontig_125.40;prot=eq;transcript=eq - supercontig_125 No
CR03G09260 cre name=OVA_fgenesh2_pg.C_scaffold_19000028;pid=206388;prot=eq;tid=206393;transcript=eq + chromosome_3 No
CR03G09640 cre name=estExt_fgenesh2_pg.C_190061;pid=190458;prot=eq;tid=190458;transcript=eq - chromosome_3 No
FV2G34570 fve RNA polymerase sigma factor rpoD (Sigma-A) (probable) transcript=eq;prot=eq;pid=gene09028 + LG2 No
FV6G26320 fve RNA polymerase sigma factor rpoD (Sigma-A) (probable) transcript=eq;prot=eq;pid=gene17946 + LG6 No
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