Gene family  

Sub-families
ORTHO006996 (23 genes in 17 species)
ORTHO012936 (14 genes in 13 species)
ORTHO013106 (14 genes in 10 species)
View all sub-families (15)
 
Keywords


Overview of gene family content




aly
Arabidopsis lyrata (5 genes)
ath
Arabidopsis thaliana (6 genes)
bdi
Brachypodium distachyon (6 genes)
cpa
Carica papaya (4 genes)
fve
Fragaria vesca (3 genes)
gma
Glycine max (11 genes)
lja
Lotus japonicus (6 genes)
mdo
Malus domestica (5 genes)
mes
Manihot esculenta (7 genes)
mtr
Medicago truncatula (1 gene)
osa
Oryza sativa ssp. japonica (8 genes)
osaindica
Oryza sativa ssp. indica (7 genes)
ppa
Physcomitrella patens (2 genes)
ptr
Populus trichocarpa (9 genes)
rco
Ricinus communis (3 genes)
sbi
Sorghum bicolor (7 genes)
tca
Theobroma cacao (3 genes)
vvi
Vitis vinifera (4 genes)
zma
Zea mays (8 genes)



The gene family HOM001077 has 105 genes in 19 species (2 outlier genes).
Smallest encompassing phylogenetic clade for this gene family :
Tandem/block/both gene duplicate percentage within this gene family :
This page uses the Flash plugin.




Index of genes with 1 constraints:

Page 1 of 6, showing 20 records out of 105 total, starting on record 1, ending on 20

gene_id species description comment strand chr outlier
AL1G33090 aly name=fgenesh2_kg.1__3330__AT1G31880.1;pid=473376;prot=eq;tid=473376 + scaffold_1 No
AL1G49390 aly name=Al_scaffold_0001_4862;pid=883095;prot=eq;tid=914608 + scaffold_1 No
AL3G14750 aly name=fgenesh2_kg.3__1509__AT3G14000.2;pid=478808;prot=eq;tid=478808 - scaffold_3 No
AL4G20950 aly name=scaffold_402165.1;pid=902664;prot=eq;tid=934177 - scaffold_4 No
AL6G20820 aly name=fgenesh2_kg.6__2092__AT5G20540.1;pid=488958;prot=eq;tid=488958 + scaffold_6 No
AT1G31880 ath Belongs to five-member BRX gene family. Arabidopsis BRX genes share high levels of similarity among each others, with several conserved domains. The most distinct is BRX domain - highly conserved in all BRX genes among distantly related species. This protein-protein interaction domain is required and sufficient for BRX activity. BRX encodes a key regulator of cell proliferation and elongation in the root, which has been implicated in the brassinosteroid (BR) pathway as well as regulation of auxin-responsive gene expression. Also involved in cytokinin-mediated inhibition of lateral root initiation. A loss-of-function allele, named brx-2 in Rodrigues et al. (2009) Plant Physiol. but changed to brx-3 to resolve nomenclature conflict (Li et al. Planta 2009:229(3):593-603), shows enhanced response to ABA-mediated inhibition of root growth.;DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein transcript=eq;prot=eq; + 1 No
AT1G54180 ath Belongs to five-member BRX gene family. Arabidopsis BRX genes share high levels of similarity among each others, with several conserved domains. The most distinct is BRX domain - highly conserved in all BRX genes among distantly related species. This protein-protein interaction domain is required and sufficient for BRX activity.;BREVIS RADIX-like 3 transcript=eq;prot=eq; + 1 No
AT2G21030 ath CONTAINS InterPro DOMAIN/s: Disease resistance/zinc finger/chromosome condensation-like region (InterPro:IPR013591); BEST Arabidopsis thaliana protein match is: DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein (TAIR:AT1G31880.1); Has 250 Blast hits to 250 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 250; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). transcript=eq;prot=eq; - 2 No
AT2G35600 ath Belongs to five-member BRX gene family. Arabidopsis BRX genes share high levels of similarity among each others, with several conserved domains. The most distinct is BRX domain - highly conserved in all BRX genes among distantly related species. This protein-protein interaction domain is required and sufficient for BRX activity.;BREVIS RADIX-like 1 transcript=eq;prot=eq; - 2 No
AT3G14000 ath Belongs to five-member BRX gene family. Arabidopsis BRX genes share high levels of similarity among each others, with several conserved domains. The most distinct is BRX domain - highly conserved in all BRX genes among distantly related species. This protein-protein interaction domain is required and sufficient for BRX activity.;DZC (Disease resistance/zinc finger/chromosome condensation-like region) domain containing protein transcript=eq;prot=eq; - 3 No
AT5G20540 ath Belongs to five-member BRX gene family. Arabidopsis BRX genes share high levels of similarity among each others, with several conserved domains. The most distinct is BRX domain - highly conserved in all BRX genes among distantly related species. This protein-protein interaction domain is required and sufficient for BRX activity.;BREVIS RADIX-like 4 transcript=eq;prot=eq; + 5 No
BD1G01210 bdi pid=Bradi1g01210.1;tid=Bradi1g01210.1;GeneName=Bradi1g01210;transcript=eq;prot=eq + Bd1 No
BD3G37710 bdi pid=Bradi3g37710.1;tid=Bradi3g37710.1;GeneName=Bradi3g37710;transcript=eq;prot=eq + Bd3 No
BD3G52537 bdi pid=Bradi3g52537.1;tid=Bradi3g52537.1;GeneName=Bradi3g52537;transcript=eq;prot=eq - Bd3 No
BD4G31550 bdi pid=Bradi4g31550.1;tid=Bradi4g31550.1;GeneName=Bradi4g31550;transcript=eq;prot=eq + Bd4 No
BD4G40660 bdi pid=Bradi4g40660.1;tid=Bradi4g40660.1;GeneName=Bradi4g40660;transcript=eq;prot=eq - Bd4 No
BD5G20580 bdi pid=Bradi5g20580.1;tid=Bradi5g20580.1;GeneName=Bradi5g20580;transcript=eq;prot=eq - Bd5 No
CP00024G00600 cpa name=evm.TU.supercontig_24.60;pid=evm.TU.supercontig_24.60;prot=eq;transcript=eq - supercontig_24 No
CP00025G01000 cpa name=evm.TU.supercontig_25.100;pid=evm.TU.supercontig_25.100;prot=eq;transcript=eq + supercontig_25 No
CP00025G01010 cpa name=evm.TU.supercontig_25.101;pid=evm.TU.supercontig_25.101;prot=eq;transcript=eq + supercontig_25 No
<< previous
1 | 2 | 3 | 4 | 5 | 6 next >>

Download genes

Include following columns
gene_id
species
description
comment
strand
chr
outlier